Variant report

Variant	rs2628420
Chromosome Location	chr8:50842474-50842475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10096242	0.84[AMR][1000 genomes]
rs10957679	0.97[AMR][1000 genomes]
rs10957681	0.88[AMR][1000 genomes]
rs10957682	0.97[AMR][1000 genomes]
rs11782772	0.88[AMR][1000 genomes]
rs12542536	0.82[AMR][1000 genomes]
rs12545695	0.88[AMR][1000 genomes]
rs12547245	0.97[AMR][1000 genomes]
rs1385980	0.83[AMR][1000 genomes]
rs1552377	0.97[AMR][1000 genomes]
rs1552379	0.88[AMR][1000 genomes]
rs170331	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2247368	0.97[AMR][1000 genomes]
rs2449960	0.97[AMR][1000 genomes]
rs2449961	0.84[AMR][1000 genomes]
rs2449962	0.97[AMR][1000 genomes]
rs2450286	0.97[AMR][1000 genomes]
rs2450287	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2450290	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs318850	0.97[AMR][1000 genomes]
rs318851	0.88[AMR][1000 genomes]
rs318853	0.88[AMR][1000 genomes]
rs318854	0.95[AMR][1000 genomes]
rs318858	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs318859	0.97[AMR][1000 genomes]
rs318861	0.97[AMR][1000 genomes]
rs318874	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs379601	0.88[AMR][1000 genomes]
rs404309	0.88[AMR][1000 genomes]
rs404686	0.88[AMR][1000 genomes]
rs412929	0.88[AMR][1000 genomes]
rs451034	0.88[AMR][1000 genomes]
rs453906	0.88[AMR][1000 genomes]
rs6988440	0.97[AMR][1000 genomes]
rs7002291	0.88[AMR][1000 genomes]
rs7003221	0.88[AMR][1000 genomes]
rs7008449	0.88[AMR][1000 genomes]
rs967107	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50838600-50854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50838800-50853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:50841800-50844000	Enhancers	Dnd41	blood
4	chr8:50842200-50850400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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