Variant report

Variant	rs12542536
Chromosome Location	chr8:50788108-50788109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10096242	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504093	0.82[EUR][1000 genomes]
rs10957679	0.84[AMR][1000 genomes]
rs10957681	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957682	0.84[AMR][1000 genomes]
rs1157932	0.82[EUR][1000 genomes]
rs11782772	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11786880	0.82[EUR][1000 genomes]
rs12545695	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12547245	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1385976	0.88[ASN][1000 genomes]
rs1385980	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486263	0.82[EUR][1000 genomes]
rs1552377	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1552378	0.95[ASN][1000 genomes]
rs1552379	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914039	0.82[EUR][1000 genomes]
rs170331	0.84[AMR][1000 genomes]
rs2247368	0.84[AMR][1000 genomes]
rs2385548	0.91[ASN][1000 genomes]
rs2385696	0.82[EUR][1000 genomes]
rs2449960	0.84[AMR][1000 genomes]
rs2449961	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449962	0.84[AMR][1000 genomes]
rs2450286	0.84[AMR][1000 genomes]
rs2450287	0.84[AMR][1000 genomes]
rs2450290	0.84[AMR][1000 genomes]
rs2628420	0.82[AMR][1000 genomes]
rs318850	0.84[AMR][1000 genomes]
rs318851	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs318853	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs318854	0.82[AMR][1000 genomes]
rs318858	0.84[AMR][1000 genomes]
rs318859	0.84[AMR][1000 genomes]
rs318861	0.84[AMR][1000 genomes]
rs318874	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs379601	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs404309	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs404686	0.93[AMR][1000 genomes]
rs412929	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs451034	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs453906	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4873120	0.82[EUR][1000 genomes]
rs55780592	0.82[EUR][1000 genomes]
rs6472789	0.96[AFR][1000 genomes]
rs6472838	0.82[EUR][1000 genomes]
rs6472839	0.89[EUR][1000 genomes]
rs6984738	0.87[ASN][1000 genomes]
rs6988440	0.84[AMR][1000 genomes]
rs7002291	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7002909	0.87[ASN][1000 genomes]
rs7003221	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7008449	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7388392	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7827777	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7828900	0.82[EUR][1000 genomes]
rs967107	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50787800-50790000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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