Variant report

Variant	rs412929
Chromosome Location	chr8:50809589-50809590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10096242	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504093	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10957679	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10957681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957682	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1157932	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11773979	0.86[ASN][1000 genomes]
rs11782772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11786880	0.84[EUR][1000 genomes]
rs11787050	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12542536	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12545695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12547245	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13264385	0.93[ASN][1000 genomes]
rs1344326	0.83[AMR][1000 genomes]
rs1385980	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486258	0.92[ASN][1000 genomes]
rs1486263	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1552377	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1552378	0.86[ASN][1000 genomes]
rs1552379	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1586364	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16913687	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16914039	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs170331	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2170953	0.86[ASN][1000 genomes]
rs2247368	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2385548	0.82[ASN][1000 genomes]
rs2385554	0.92[ASN][1000 genomes]
rs2385696	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385697	0.86[ASN][1000 genomes]
rs2449960	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2449961	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2449962	0.90[AMR][1000 genomes]
rs2450286	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2450287	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2450290	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2628420	0.88[AMR][1000 genomes]
rs28869911	0.80[ASN][1000 genomes]
rs318850	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs318851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs318853	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs318854	0.88[AMR][1000 genomes]
rs318858	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs318859	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs318861	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs318874	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs379601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3812424	0.80[ASN][1000 genomes]
rs3812426	0.95[ASN][1000 genomes]
rs404309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs404686	1.00[AMR][1000 genomes]
rs4460388	0.87[ASN][1000 genomes]
rs451034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs453906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873118	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873119	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873120	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873392	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55780592	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55879210	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6472789	0.94[AFR][1000 genomes]
rs6472838	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6472839	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6984738	0.93[ASN][1000 genomes]
rs6988440	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7002291	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7002909	0.93[ASN][1000 genomes]
rs7003221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004973	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7008449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73676077	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7388392	0.84[EUR][1000 genomes]
rs7827777	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7828900	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs923060	0.88[ASN][1000 genomes]
rs9643685	0.86[ASN][1000 genomes]
rs967107	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs974740	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs974742	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs993553	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50807600-50809800	Enhancers	Fetal Intestine Large	intestine
2	chr8:50808000-50809800	Enhancers	Liver	Liver

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