Variant report

Variant	rs6472789
Chromosome Location	chr8:50792628-50792629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10096242	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10957681	0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11782772	0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12542536	0.96[AFR][1000 genomes]
rs12545695	0.96[AFR][1000 genomes]
rs1552379	0.95[AFR][1000 genomes]
rs379601	0.94[AFR][1000 genomes]
rs404309	0.94[AFR][1000 genomes]
rs412929	0.94[AFR][1000 genomes]
rs451034	0.94[AFR][1000 genomes]
rs453906	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6984738	0.83[ASN][1000 genomes]
rs7002291	0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7002909	0.83[ASN][1000 genomes]
rs7003221	0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7008449	0.96[AFR][1000 genomes]
rs7827777	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50791000-50795400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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