Variant report

Variant	rs1552379
Chromosome Location	chr8:50787073-50787074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 210 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10086004	0.84[ASN][1000 genomes]
rs10089399	0.84[ASN][1000 genomes]
rs10090657	0.84[ASN][1000 genomes]
rs10092384	0.84[ASN][1000 genomes]
rs10096242	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10107423	0.84[ASN][1000 genomes]
rs10111730	0.84[ASN][1000 genomes]
rs10112215	0.87[JPT][hapmap]
rs10112818	0.88[JPT][hapmap]
rs1023979	0.82[JPT][hapmap]
rs1038534	0.84[ASN][1000 genomes]
rs10504093	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1074385	0.84[ASN][1000 genomes]
rs10957620	0.84[ASN][1000 genomes]
rs10957679	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10957681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957682	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10957739	0.81[JPT][hapmap]
rs10957741	0.82[JPT][hapmap]
rs1157932	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs11776388	0.88[EUR][1000 genomes]
rs11777957	0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs11778027	0.88[EUR][1000 genomes]
rs11782597	0.81[ASN][1000 genomes]
rs11782772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11783503	0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs11783631	0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs11784278	0.88[EUR][1000 genomes]
rs11784738	0.88[EUR][1000 genomes]
rs11785147	0.84[ASN][1000 genomes]
rs11786880	0.92[EUR][1000 genomes]
rs11786939	0.84[ASN][1000 genomes]
rs11787050	0.84[EUR][1000 genomes]
rs12541363	0.87[JPT][hapmap]
rs12542041	0.81[ASN][1000 genomes]
rs12542536	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545695	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547245	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677051	0.84[ASN][1000 genomes]
rs13251355	0.84[ASN][1000 genomes]
rs13255117	0.84[ASN][1000 genomes]
rs13261298	0.84[ASN][1000 genomes]
rs13264385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13267366	0.84[ASN][1000 genomes]
rs13273334	0.82[JPT][hapmap]
rs1344326	0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1352112	0.84[ASN][1000 genomes]
rs1352114	0.82[JPT][hapmap]
rs1385974	0.84[ASN][1000 genomes]
rs1385975	0.84[ASN][1000 genomes]
rs1385976	0.93[ASN][1000 genomes]
rs1385980	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1385982	0.84[ASN][1000 genomes]
rs1484805	0.82[JPT][hapmap]
rs1486241	0.84[ASN][1000 genomes]
rs1486242	0.84[ASN][1000 genomes]
rs1486243	0.84[ASN][1000 genomes]
rs1486251	0.84[ASN][1000 genomes]
rs1486252	0.84[ASN][1000 genomes]
rs1486253	0.84[ASN][1000 genomes]
rs1486254	0.84[ASN][1000 genomes]
rs1486258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1486263	0.92[EUR][1000 genomes]
rs1552372	0.84[ASN][1000 genomes]
rs1552373	0.84[ASN][1000 genomes]
rs1552375	0.83[ASN][1000 genomes]
rs1552377	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552378	1.00[ASN][1000 genomes]
rs1552380	0.89[JPT][hapmap]
rs1580468	0.84[ASN][1000 genomes]
rs1586364	0.84[EUR][1000 genomes]
rs1601569	0.84[ASN][1000 genomes]
rs16912794	0.84[ASN][1000 genomes]
rs16913087	0.84[ASN][1000 genomes]
rs16913172	0.80[ASN][1000 genomes]
rs16913461	0.84[ASN][1000 genomes]
rs16913472	0.84[ASN][1000 genomes]
rs16913475	0.84[ASN][1000 genomes]
rs16913687	0.84[EUR][1000 genomes]
rs16914039	0.92[EUR][1000 genomes]
rs170331	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17676077	0.82[ASN][1000 genomes]
rs1979535	0.84[ASN][1000 genomes]
rs1979536	0.81[ASN][1000 genomes]
rs1994344	0.84[ASN][1000 genomes]
rs2015043	0.87[JPT][hapmap]
rs2086888	0.81[JPT][hapmap]
rs2129161	0.88[JPT][hapmap]
rs2129162	0.84[ASN][1000 genomes]
rs2129164	0.84[ASN][1000 genomes]
rs2129165	0.80[ASN][1000 genomes]
rs2129169	0.88[JPT][hapmap]
rs2170953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2220157	0.88[JPT][hapmap]
rs2247368	0.90[AMR][1000 genomes]
rs2385545	0.84[ASN][1000 genomes]
rs2385546	0.84[ASN][1000 genomes]
rs2385547	0.84[ASN][1000 genomes]
rs2385548	0.96[ASN][1000 genomes]
rs2385554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2385696	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2385697	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2449960	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2449961	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2449962	0.90[AMR][1000 genomes]
rs2449963	0.81[JPT][hapmap]
rs2450286	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2450287	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2450290	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2628420	0.88[AMR][1000 genomes]
rs318850	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs318851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs318853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318854	0.86[CHB][hapmap];0.88[AMR][1000 genomes]
rs318858	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs318859	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs318861	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs318867	0.82[JPT][hapmap]
rs318874	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs318913	0.81[JPT][hapmap]
rs36160411	0.84[ASN][1000 genomes]
rs379601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3812426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs404309	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs404686	1.00[AMR][1000 genomes]
rs412929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242456	0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs4339657	0.83[ASN][1000 genomes]
rs4383988	0.84[ASN][1000 genomes]
rs4460388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs451034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs453906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4584153	0.84[ASN][1000 genomes]
rs4634657	0.84[EUR][1000 genomes]
rs4873113	0.84[ASN][1000 genomes]
rs4873114	0.84[ASN][1000 genomes]
rs4873116	0.84[ASN][1000 genomes]
rs4873118	0.84[EUR][1000 genomes]
rs4873119	0.84[EUR][1000 genomes]
rs4873120	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4873121	0.88[EUR][1000 genomes]
rs4873123	0.88[JPT][hapmap]
rs4873367	0.81[JPT][hapmap]
rs4873382	0.83[ASN][1000 genomes]
rs4873383	0.84[ASN][1000 genomes]
rs4873388	0.84[ASN][1000 genomes]
rs4873391	0.84[ASN][1000 genomes]
rs4873392	0.84[EUR][1000 genomes]
rs4873401	0.88[EUR][1000 genomes]
rs55636909	0.83[ASN][1000 genomes]
rs55780592	0.92[EUR][1000 genomes]
rs55879210	0.84[EUR][1000 genomes]
rs56040457	0.84[EUR][1000 genomes]
rs56659775	0.84[ASN][1000 genomes]
rs57462717	0.84[ASN][1000 genomes]
rs58764084	0.84[ASN][1000 genomes]
rs59240550	0.88[EUR][1000 genomes]
rs59379959	0.84[ASN][1000 genomes]
rs59679832	0.88[EUR][1000 genomes]
rs59848488	0.84[ASN][1000 genomes]
rs60213702	0.84[ASN][1000 genomes]
rs60631955	0.84[ASN][1000 genomes]
rs61662535	0.84[ASN][1000 genomes]
rs6472721	0.84[ASN][1000 genomes]
rs6472789	0.95[AFR][1000 genomes]
rs6472838	0.92[EUR][1000 genomes]
rs6472839	1.00[EUR][1000 genomes]
rs6984738	0.92[ASN][1000 genomes]
rs6988440	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6991925	0.89[JPT][hapmap]
rs6994224	0.84[ASN][1000 genomes]
rs7002291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002909	0.92[ASN][1000 genomes]
rs7003221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7004973	0.88[EUR][1000 genomes]
rs7008449	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008924	0.83[ASN][1000 genomes]
rs7010915	0.87[JPT][hapmap]
rs7013903	0.84[ASN][1000 genomes]
rs7014520	0.87[JPT][hapmap]
rs73582706	0.84[ASN][1000 genomes]
rs73582713	0.84[ASN][1000 genomes]
rs73582718	0.83[ASN][1000 genomes]
rs73582724	0.84[ASN][1000 genomes]
rs73582755	0.84[ASN][1000 genomes]
rs73582756	0.84[ASN][1000 genomes]
rs73676077	0.84[EUR][1000 genomes]
rs7388392	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7825552	0.84[ASN][1000 genomes]
rs7826013	0.81[ASN][1000 genomes]
rs7827777	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7828311	0.84[ASN][1000 genomes]
rs7828900	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes]
rs7833377	0.82[JPT][hapmap]
rs923058	0.82[JPT][hapmap]
rs923060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9298228	0.84[ASN][1000 genomes]
rs9298229	0.84[ASN][1000 genomes]
rs931293	0.88[JPT][hapmap]
rs931294	0.88[JPT][hapmap]
rs964011	0.84[ASN][1000 genomes]
rs9643689	0.81[JPT][hapmap]
rs9643692	0.81[JPT][hapmap]
rs967107	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs971926	0.87[JPT][hapmap]
rs974740	0.80[EUR][1000 genomes]
rs974742	0.84[EUR][1000 genomes]
rs9886451	0.84[ASN][1000 genomes]
rs993553	0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50785200-50787800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50785400-50787600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:50786600-50787400	Enhancers	NHDF-Ad	bronchial
4	chr8:50786800-50787400	Enhancers	HMEC	breast
5	chr8:50786800-50787800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:50787000-50787400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:50787000-50787400	Enhancers	NH-A	brain
8	chr8:50787000-50787600	Enhancers	Hela-S3	cervix
9	chr8:50787000-50787800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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