Variant report

Variant	rs73676077
Chromosome Location	chr8:50819648-50819649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-738G5.2.1-8	chr8:50819423-50820006	ENSG00000271148.1

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10086004	0.84[ASN][1000 genomes]
rs10089399	0.84[ASN][1000 genomes]
rs10090657	0.84[ASN][1000 genomes]
rs10092384	0.84[ASN][1000 genomes]
rs10096242	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10107423	0.84[ASN][1000 genomes]
rs10111730	0.84[ASN][1000 genomes]
rs1038534	0.84[ASN][1000 genomes]
rs10504093	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1074385	0.84[ASN][1000 genomes]
rs10957620	0.84[ASN][1000 genomes]
rs10957679	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957681	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957682	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1157932	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11773979	0.80[ASN][1000 genomes]
rs11776388	0.87[EUR][1000 genomes]
rs11777957	0.87[EUR][1000 genomes]
rs11778027	0.87[EUR][1000 genomes]
rs11781675	0.93[ASN][1000 genomes]
rs11782772	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11783503	0.87[EUR][1000 genomes]
rs11783607	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11783631	0.87[EUR][1000 genomes]
rs11784278	0.87[EUR][1000 genomes]
rs11784738	0.87[EUR][1000 genomes]
rs11785147	0.84[ASN][1000 genomes]
rs11786880	0.91[EUR][1000 genomes]
rs11786939	0.84[ASN][1000 genomes]
rs11787050	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542041	0.81[ASN][1000 genomes]
rs12545695	0.84[EUR][1000 genomes]
rs12547245	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677051	0.84[ASN][1000 genomes]
rs13251355	0.84[ASN][1000 genomes]
rs13255117	0.84[ASN][1000 genomes]
rs13261298	0.84[ASN][1000 genomes]
rs13264385	0.83[ASN][1000 genomes]
rs13267366	0.84[ASN][1000 genomes]
rs1344326	0.87[EUR][1000 genomes]
rs1352112	0.84[ASN][1000 genomes]
rs1385974	0.84[ASN][1000 genomes]
rs1385975	0.84[ASN][1000 genomes]
rs1385980	0.84[EUR][1000 genomes]
rs1385982	0.84[ASN][1000 genomes]
rs1486241	0.84[ASN][1000 genomes]
rs1486242	0.84[ASN][1000 genomes]
rs1486243	0.84[ASN][1000 genomes]
rs1486251	0.84[ASN][1000 genomes]
rs1486252	0.84[ASN][1000 genomes]
rs1486253	0.84[ASN][1000 genomes]
rs1486254	0.84[ASN][1000 genomes]
rs1486258	0.84[ASN][1000 genomes]
rs1486263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1552372	0.84[ASN][1000 genomes]
rs1552373	0.84[ASN][1000 genomes]
rs1552375	0.83[ASN][1000 genomes]
rs1552377	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552379	0.84[EUR][1000 genomes]
rs1580468	0.84[ASN][1000 genomes]
rs1586364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1601569	0.84[ASN][1000 genomes]
rs16912794	0.84[ASN][1000 genomes]
rs16913087	0.84[ASN][1000 genomes]
rs16913172	0.80[ASN][1000 genomes]
rs16913461	0.84[ASN][1000 genomes]
rs16913472	0.84[ASN][1000 genomes]
rs16913475	0.84[ASN][1000 genomes]
rs16913687	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16914039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs170331	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1979535	0.84[ASN][1000 genomes]
rs1994344	0.84[ASN][1000 genomes]
rs2129162	0.84[ASN][1000 genomes]
rs2129164	0.84[ASN][1000 genomes]
rs2129165	0.80[ASN][1000 genomes]
rs2170953	0.80[ASN][1000 genomes]
rs2247368	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385545	0.84[ASN][1000 genomes]
rs2385546	0.84[ASN][1000 genomes]
rs2385547	0.84[ASN][1000 genomes]
rs2385554	0.84[ASN][1000 genomes]
rs2385696	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2385697	0.80[ASN][1000 genomes]
rs2449960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449961	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2450286	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2450287	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450290	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28869911	0.96[ASN][1000 genomes]
rs318850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318851	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs318853	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs318854	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs318858	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318859	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318861	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318874	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs379601	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3812426	0.87[ASN][1000 genomes]
rs404309	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs412929	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4242456	0.87[EUR][1000 genomes]
rs4339657	0.83[ASN][1000 genomes]
rs4383988	0.84[ASN][1000 genomes]
rs451034	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs453906	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4584153	0.84[ASN][1000 genomes]
rs4634657	0.83[EUR][1000 genomes]
rs4873113	0.84[ASN][1000 genomes]
rs4873114	0.84[ASN][1000 genomes]
rs4873116	0.84[ASN][1000 genomes]
rs4873118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873120	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4873121	0.87[EUR][1000 genomes]
rs4873382	0.83[ASN][1000 genomes]
rs4873383	0.84[ASN][1000 genomes]
rs4873388	0.84[ASN][1000 genomes]
rs4873391	0.84[ASN][1000 genomes]
rs4873392	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873401	0.87[EUR][1000 genomes]
rs55636909	0.83[ASN][1000 genomes]
rs55780592	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55879210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56040457	0.83[EUR][1000 genomes]
rs56659775	0.84[ASN][1000 genomes]
rs57462717	0.84[ASN][1000 genomes]
rs58764084	0.84[ASN][1000 genomes]
rs59240550	0.87[EUR][1000 genomes]
rs59379959	0.84[ASN][1000 genomes]
rs59679832	0.87[EUR][1000 genomes]
rs59848488	0.84[ASN][1000 genomes]
rs60213702	0.84[ASN][1000 genomes]
rs60631955	0.84[ASN][1000 genomes]
rs61662535	0.84[ASN][1000 genomes]
rs6472721	0.84[ASN][1000 genomes]
rs6472838	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6472839	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6984738	0.83[ASN][1000 genomes]
rs6988440	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6994224	0.84[ASN][1000 genomes]
rs7002291	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7002909	0.83[ASN][1000 genomes]
rs7003221	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7003721	0.85[ASN][1000 genomes]
rs7004973	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7008449	0.84[EUR][1000 genomes]
rs7008924	0.83[ASN][1000 genomes]
rs7013903	0.84[ASN][1000 genomes]
rs73582706	0.84[ASN][1000 genomes]
rs73582713	0.84[ASN][1000 genomes]
rs73582718	0.83[ASN][1000 genomes]
rs73582724	0.84[ASN][1000 genomes]
rs73582755	0.84[ASN][1000 genomes]
rs73582756	0.84[ASN][1000 genomes]
rs7388392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7825552	0.84[ASN][1000 genomes]
rs7826013	0.81[ASN][1000 genomes]
rs7828311	0.84[ASN][1000 genomes]
rs7828900	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs923060	0.83[ASN][1000 genomes]
rs9298228	0.84[ASN][1000 genomes]
rs9298229	0.84[ASN][1000 genomes]
rs964011	0.84[ASN][1000 genomes]
rs9643685	0.80[ASN][1000 genomes]
rs967107	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886451	0.84[ASN][1000 genomes]
rs993553	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50814000-50819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50816000-50821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:50818400-50821400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:50819600-50820200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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