Variant report

Variant	rs7828311
Chromosome Location	chr8:50780529-50780530
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50777318..50779724-chr8:50779730..50781959,2	MCF-7	breast:

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10086004	1.00[ASN][1000 genomes]
rs10089399	1.00[ASN][1000 genomes]
rs10090657	1.00[ASN][1000 genomes]
rs10092384	1.00[ASN][1000 genomes]
rs10107423	1.00[ASN][1000 genomes]
rs10111730	1.00[ASN][1000 genomes]
rs1038534	1.00[ASN][1000 genomes]
rs1074385	1.00[ASN][1000 genomes]
rs10957620	1.00[ASN][1000 genomes]
rs10957679	0.88[ASN][1000 genomes]
rs10957682	0.88[ASN][1000 genomes]
rs11785147	1.00[ASN][1000 genomes]
rs11786939	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787050	0.88[ASN][1000 genomes]
rs12542041	0.97[ASN][1000 genomes]
rs12542687	0.85[ASN][1000 genomes]
rs12545695	0.84[ASN][1000 genomes]
rs12547245	0.97[ASN][1000 genomes]
rs12550124	0.81[ASN][1000 genomes]
rs12677051	1.00[ASN][1000 genomes]
rs13251355	1.00[ASN][1000 genomes]
rs13255117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267366	1.00[ASN][1000 genomes]
rs1352112	1.00[ASN][1000 genomes]
rs1352113	0.86[ASN][1000 genomes]
rs1385974	1.00[ASN][1000 genomes]
rs1385975	1.00[ASN][1000 genomes]
rs1385976	0.88[ASN][1000 genomes]
rs1385980	0.85[ASN][1000 genomes]
rs1385982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486241	1.00[ASN][1000 genomes]
rs1486242	1.00[ASN][1000 genomes]
rs1486243	1.00[ASN][1000 genomes]
rs1486251	1.00[ASN][1000 genomes]
rs1486252	1.00[ASN][1000 genomes]
rs1486253	1.00[ASN][1000 genomes]
rs1486254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486263	0.82[ASN][1000 genomes]
rs1552371	0.86[ASN][1000 genomes]
rs1552372	1.00[ASN][1000 genomes]
rs1552373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552375	0.98[ASN][1000 genomes]
rs1552377	0.97[ASN][1000 genomes]
rs1552378	0.84[ASN][1000 genomes]
rs1552379	0.84[ASN][1000 genomes]
rs1580468	1.00[ASN][1000 genomes]
rs1586364	0.88[ASN][1000 genomes]
rs1601569	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913172	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16913461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913687	0.88[ASN][1000 genomes]
rs16914039	0.82[ASN][1000 genomes]
rs170331	0.82[ASN][1000 genomes]
rs1906014	0.84[ASN][1000 genomes]
rs1906015	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1979535	1.00[ASN][1000 genomes]
rs1994344	1.00[ASN][1000 genomes]
rs2129162	1.00[ASN][1000 genomes]
rs2129164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129165	0.96[ASN][1000 genomes]
rs2247368	0.84[ASN][1000 genomes]
rs2385545	1.00[ASN][1000 genomes]
rs2385546	1.00[ASN][1000 genomes]
rs2385547	1.00[ASN][1000 genomes]
rs2385548	0.88[ASN][1000 genomes]
rs2449960	0.84[ASN][1000 genomes]
rs2450286	0.82[ASN][1000 genomes]
rs2450287	0.81[ASN][1000 genomes]
rs2450290	0.81[ASN][1000 genomes]
rs28869911	0.82[ASN][1000 genomes]
rs318850	0.84[ASN][1000 genomes]
rs318858	0.82[ASN][1000 genomes]
rs318859	0.82[ASN][1000 genomes]
rs318861	0.82[ASN][1000 genomes]
rs318874	0.82[ASN][1000 genomes]
rs4242455	0.81[ASN][1000 genomes]
rs4339657	0.98[ASN][1000 genomes]
rs4383988	1.00[ASN][1000 genomes]
rs4389954	0.81[ASN][1000 genomes]
rs4457345	0.81[ASN][1000 genomes]
rs4584153	1.00[ASN][1000 genomes]
rs4873113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873118	0.88[ASN][1000 genomes]
rs4873119	0.88[ASN][1000 genomes]
rs4873376	0.81[ASN][1000 genomes]
rs4873379	0.83[ASN][1000 genomes]
rs4873382	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873392	0.88[ASN][1000 genomes]
rs55636909	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55879210	0.88[ASN][1000 genomes]
rs56659775	1.00[ASN][1000 genomes]
rs57462717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58764084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59379959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59848488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60213702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60631955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61662535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988440	0.85[ASN][1000 genomes]
rs6994224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004973	0.82[ASN][1000 genomes]
rs7008449	0.84[ASN][1000 genomes]
rs7008924	0.98[ASN][1000 genomes]
rs7013903	1.00[ASN][1000 genomes]
rs73582706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582718	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73582724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73676017	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73676077	0.84[ASN][1000 genomes]
rs7388392	0.97[ASN][1000 genomes]
rs7463456	0.81[ASN][1000 genomes]
rs7825552	1.00[ASN][1000 genomes]
rs7826013	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7831807	0.81[ASN][1000 genomes]
rs9298228	1.00[ASN][1000 genomes]
rs9298229	1.00[ASN][1000 genomes]
rs964011	1.00[ASN][1000 genomes]
rs967107	0.84[ASN][1000 genomes]
rs974740	0.88[ASN][1000 genomes]
rs974742	0.88[ASN][1000 genomes]
rs9886451	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50775200-50782200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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