Variant report

Variant	rs12550124
Chromosome Location	chr8:50694780-50694781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10086004	0.81[ASN][1000 genomes]
rs10089399	0.81[ASN][1000 genomes]
rs10090657	0.81[ASN][1000 genomes]
rs10092384	0.81[ASN][1000 genomes]
rs10107423	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10111730	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1038534	0.81[ASN][1000 genomes]
rs1074385	0.81[ASN][1000 genomes]
rs10957620	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11782597	0.82[AMR][1000 genomes]
rs11785147	0.81[ASN][1000 genomes]
rs11786939	0.81[ASN][1000 genomes]
rs12542687	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12677051	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13251355	0.81[ASN][1000 genomes]
rs13255117	0.81[ASN][1000 genomes]
rs13261298	0.81[ASN][1000 genomes]
rs13267366	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1352112	0.81[ASN][1000 genomes]
rs1385974	0.81[ASN][1000 genomes]
rs1385975	0.81[ASN][1000 genomes]
rs1385982	0.81[ASN][1000 genomes]
rs1390586	0.81[ASN][1000 genomes]
rs1486241	0.81[ASN][1000 genomes]
rs1486242	0.81[ASN][1000 genomes]
rs1486243	0.81[ASN][1000 genomes]
rs1486251	0.81[ASN][1000 genomes]
rs1486252	0.81[ASN][1000 genomes]
rs1486253	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1486254	0.81[ASN][1000 genomes]
rs1496311	0.81[ASN][1000 genomes]
rs1552372	0.81[ASN][1000 genomes]
rs1552373	0.81[ASN][1000 genomes]
rs1580468	0.81[ASN][1000 genomes]
rs1601569	0.81[ASN][1000 genomes]
rs16912794	0.81[ASN][1000 genomes]
rs16913087	0.81[ASN][1000 genomes]
rs16913461	0.81[ASN][1000 genomes]
rs16913472	0.81[ASN][1000 genomes]
rs16913475	0.81[ASN][1000 genomes]
rs1979535	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1979536	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1994344	0.81[ASN][1000 genomes]
rs2129162	0.81[ASN][1000 genomes]
rs2129164	0.81[ASN][1000 genomes]
rs2385545	0.81[ASN][1000 genomes]
rs2385546	0.81[ASN][1000 genomes]
rs2385547	0.81[ASN][1000 genomes]
rs35623593	0.81[ASN][1000 genomes]
rs4242455	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383988	0.81[ASN][1000 genomes]
rs4389954	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584153	0.81[ASN][1000 genomes]
rs4599827	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873113	0.81[ASN][1000 genomes]
rs4873114	0.81[ASN][1000 genomes]
rs4873116	0.81[ASN][1000 genomes]
rs4873376	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873379	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873383	0.81[ASN][1000 genomes]
rs4873388	0.81[ASN][1000 genomes]
rs4873391	0.81[ASN][1000 genomes]
rs56659775	0.81[ASN][1000 genomes]
rs57462717	0.81[ASN][1000 genomes]
rs58764084	0.81[ASN][1000 genomes]
rs59379959	0.81[ASN][1000 genomes]
rs59848488	0.81[ASN][1000 genomes]
rs60213702	0.81[ASN][1000 genomes]
rs60311298	0.82[EUR][1000 genomes]
rs60631955	0.81[ASN][1000 genomes]
rs61662535	0.81[ASN][1000 genomes]
rs6472721	0.81[ASN][1000 genomes]
rs66647778	0.83[EUR][1000 genomes]
rs6994224	0.81[ASN][1000 genomes]
rs7013903	0.81[ASN][1000 genomes]
rs73582706	0.81[ASN][1000 genomes]
rs73582713	0.81[ASN][1000 genomes]
rs73582724	0.81[ASN][1000 genomes]
rs73582755	0.81[ASN][1000 genomes]
rs73582756	0.81[ASN][1000 genomes]
rs73676017	0.83[ASN][1000 genomes]
rs7463456	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825552	0.81[ASN][1000 genomes]
rs7828311	0.81[ASN][1000 genomes]
rs7831807	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298228	0.81[ASN][1000 genomes]
rs9298229	0.81[ASN][1000 genomes]
rs964011	0.81[ASN][1000 genomes]
rs9886451	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50694600-50695200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links