Variant report

Variant	rs60311298
Chromosome Location	chr8:50706347-50706348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10107423	0.89[EUR][1000 genomes]
rs10111730	0.88[EUR][1000 genomes]
rs1038534	0.86[EUR][1000 genomes]
rs10957620	0.89[EUR][1000 genomes]
rs11782597	0.88[EUR][1000 genomes]
rs11989680	0.90[EUR][1000 genomes]
rs11991730	0.90[EUR][1000 genomes]
rs11992716	0.90[EUR][1000 genomes]
rs11992755	0.89[EUR][1000 genomes]
rs12550124	0.82[EUR][1000 genomes]
rs12677051	0.89[EUR][1000 genomes]
rs13267366	0.86[EUR][1000 genomes]
rs1486253	0.87[EUR][1000 genomes]
rs17674246	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17674389	0.90[EUR][1000 genomes]
rs1906013	0.89[EUR][1000 genomes]
rs1979535	0.89[EUR][1000 genomes]
rs1979536	0.89[EUR][1000 genomes]
rs1994344	0.86[EUR][1000 genomes]
rs35958802	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4339657	0.86[EUR][1000 genomes]
rs4389954	0.82[EUR][1000 genomes]
rs4457345	0.82[EUR][1000 genomes]
rs4507777	0.82[EUR][1000 genomes]
rs4599827	0.84[EUR][1000 genomes]
rs56076516	0.90[EUR][1000 genomes]
rs57165932	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6472722	0.91[EUR][1000 genomes]
rs72636668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636670	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636673	0.92[EUR][1000 genomes]
rs72636675	0.93[EUR][1000 genomes]
rs72636676	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636678	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636684	0.93[EUR][1000 genomes]
rs72636691	0.90[EUR][1000 genomes]
rs72636696	0.90[EUR][1000 genomes]
rs72636698	0.90[EUR][1000 genomes]
rs72636701	0.90[EUR][1000 genomes]
rs72636702	0.90[EUR][1000 genomes]
rs986450	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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