Variant report

Variant	rs17674246
Chromosome Location	chr8:50732569-50732570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10107423	0.94[EUR][1000 genomes]
rs10111730	0.93[EUR][1000 genomes]
rs1038534	0.95[EUR][1000 genomes]
rs10504092	0.83[EUR][1000 genomes]
rs10957620	0.94[EUR][1000 genomes]
rs11782597	0.93[EUR][1000 genomes]
rs11989680	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11991730	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11992716	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11992755	0.98[EUR][1000 genomes]
rs12677051	0.92[EUR][1000 genomes]
rs13267366	0.81[CEU][hapmap];0.95[EUR][1000 genomes]
rs1352117	0.90[CEU][hapmap];0.84[GIH][hapmap]
rs1486245	0.83[EUR][1000 genomes]
rs1486253	0.96[EUR][1000 genomes]
rs167629	1.00[CEU][hapmap]
rs167630	0.89[CEU][hapmap]
rs17674389	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17674783	0.83[EUR][1000 genomes]
rs17747294	0.83[EUR][1000 genomes]
rs17747567	0.83[EUR][1000 genomes]
rs17747896	0.83[EUR][1000 genomes]
rs17747929	0.83[EUR][1000 genomes]
rs182646	1.00[CEU][hapmap]
rs1906013	0.98[EUR][1000 genomes]
rs1979535	0.94[EUR][1000 genomes]
rs1979536	0.94[EUR][1000 genomes]
rs1994344	0.95[EUR][1000 genomes]
rs2200494	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap]
rs223081	0.90[CEU][hapmap]
rs2385544	0.83[EUR][1000 genomes]
rs2449957	0.90[CEU][hapmap]
rs2449958	1.00[CEU][hapmap]
rs2450288	1.00[CEU][hapmap]
rs2450291	1.00[CEU][hapmap]
rs2628417	1.00[CEU][hapmap]
rs2630550	1.00[CEU][hapmap]
rs318860	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs318862	1.00[CEU][hapmap]
rs318864	1.00[CEU][hapmap]
rs318870	1.00[CEU][hapmap]
rs318871	1.00[CEU][hapmap]
rs318872	0.90[CEU][hapmap]
rs318873	0.90[CEU][hapmap];0.84[GIH][hapmap]
rs318875	0.90[CEU][hapmap]
rs318877	1.00[CEU][hapmap]
rs318884	1.00[CEU][hapmap]
rs318885	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs318888	1.00[CEU][hapmap]
rs318890	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs318893	0.89[CEU][hapmap]
rs318894	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs318902	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs318903	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs318905	0.89[CEU][hapmap]
rs318906	0.89[CEU][hapmap]
rs318908	0.89[CEU][hapmap]
rs318910	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs318911	0.89[CEU][hapmap]
rs318912	0.89[CEU][hapmap]
rs35958802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs365318	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs366526	1.00[CEU][hapmap]
rs380279	1.00[CEU][hapmap]
rs384406	1.00[CEU][hapmap]
rs391798	1.00[CEU][hapmap]
rs415276	0.90[CEU][hapmap];0.81[GIH][hapmap]
rs417918	0.88[CEU][hapmap]
rs4339657	0.95[EUR][1000 genomes]
rs4377975	0.82[EUR][1000 genomes]
rs55920504	0.82[EUR][1000 genomes]
rs56076516	0.99[EUR][1000 genomes]
rs57165932	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57585353	0.83[EUR][1000 genomes]
rs58597929	0.82[EUR][1000 genomes]
rs59405147	0.82[EUR][1000 genomes]
rs60061614	0.83[EUR][1000 genomes]
rs60311298	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6472722	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72636668	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636670	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636673	0.97[EUR][1000 genomes]
rs72636675	0.98[EUR][1000 genomes]
rs72636676	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636678	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636684	0.98[EUR][1000 genomes]
rs72636691	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72636696	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72636698	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72636701	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72636702	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72638307	0.83[EUR][1000 genomes]
rs72638311	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72638312	0.83[EUR][1000 genomes]
rs72638332	0.83[EUR][1000 genomes]
rs72638338	0.82[EUR][1000 genomes]
rs967110	1.00[CEU][hapmap]
rs967116	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs986450	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs993552	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:50729800-50734600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:50729800-50735200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:50730000-50734200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:50730000-50735000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:50730000-50735200	Weak transcription	NH-A	brain
7	chr8:50730200-50735200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:50730800-50735200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:50731200-50734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:50731200-50735400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:50731400-50735200	Weak transcription	NHDF-Ad	bronchial

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