Variant report

Variant	rs58597929
Chromosome Location	chr8:50781437-50781438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50777318..50779724-chr8:50779730..50781959,2	MCF-7	breast:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10086004	0.95[EUR][1000 genomes]
rs10089399	0.95[EUR][1000 genomes]
rs10090657	0.95[EUR][1000 genomes]
rs10092384	0.95[EUR][1000 genomes]
rs10504092	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1074385	0.96[EUR][1000 genomes]
rs11785147	0.95[EUR][1000 genomes]
rs11989680	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11991730	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11992716	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11992755	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12542041	0.95[EUR][1000 genomes]
rs13251355	0.96[EUR][1000 genomes]
rs1352112	0.95[EUR][1000 genomes]
rs1352113	0.86[EUR][1000 genomes]
rs1352117	0.81[EUR][1000 genomes]
rs1385974	0.95[EUR][1000 genomes]
rs1385975	0.95[EUR][1000 genomes]
rs1385976	0.95[EUR][1000 genomes]
rs1486241	0.95[EUR][1000 genomes]
rs1486242	0.95[EUR][1000 genomes]
rs1486243	0.95[EUR][1000 genomes]
rs1486245	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1486251	0.95[EUR][1000 genomes]
rs1486252	0.95[EUR][1000 genomes]
rs1552372	0.95[EUR][1000 genomes]
rs1552378	0.81[EUR][1000 genomes]
rs1580468	0.96[EUR][1000 genomes]
rs167629	0.81[EUR][1000 genomes]
rs17674246	0.82[EUR][1000 genomes]
rs17674389	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17674783	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17747294	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17747567	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17747896	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17747929	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs182646	0.88[EUR][1000 genomes]
rs1906013	0.82[EUR][1000 genomes]
rs1906014	0.82[EUR][1000 genomes]
rs2129162	0.96[EUR][1000 genomes]
rs2129165	0.96[EUR][1000 genomes]
rs2200494	0.88[EUR][1000 genomes]
rs223081	0.86[EUR][1000 genomes]
rs2385544	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2385545	0.95[EUR][1000 genomes]
rs2385546	0.96[EUR][1000 genomes]
rs2385547	0.96[EUR][1000 genomes]
rs2385548	0.96[EUR][1000 genomes]
rs2449957	0.86[EUR][1000 genomes]
rs2449958	0.88[EUR][1000 genomes]
rs2450285	0.86[EUR][1000 genomes]
rs2450288	0.88[EUR][1000 genomes]
rs2450291	0.88[EUR][1000 genomes]
rs2628417	0.88[EUR][1000 genomes]
rs318860	0.86[EUR][1000 genomes]
rs318862	0.88[EUR][1000 genomes]
rs318864	0.88[EUR][1000 genomes]
rs318870	0.87[EUR][1000 genomes]
rs318871	0.87[EUR][1000 genomes]
rs318872	0.86[EUR][1000 genomes]
rs318873	0.86[EUR][1000 genomes]
rs318875	0.86[EUR][1000 genomes]
rs318877	0.81[EUR][1000 genomes]
rs35958802	0.80[EUR][1000 genomes]
rs365318	0.88[EUR][1000 genomes]
rs366526	0.88[EUR][1000 genomes]
rs380279	0.86[EUR][1000 genomes]
rs384406	0.88[EUR][1000 genomes]
rs391798	0.88[EUR][1000 genomes]
rs402156	0.86[EUR][1000 genomes]
rs406337	0.88[EUR][1000 genomes]
rs415276	0.86[EUR][1000 genomes]
rs436688	0.87[EUR][1000 genomes]
rs4377975	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383988	0.95[EUR][1000 genomes]
rs4584153	0.95[EUR][1000 genomes]
rs55920504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56076516	0.83[EUR][1000 genomes]
rs57165932	0.83[EUR][1000 genomes]
rs57585353	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59405147	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60061614	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6472722	0.82[EUR][1000 genomes]
rs7008924	0.95[EUR][1000 genomes]
rs7013903	0.95[EUR][1000 genomes]
rs72636668	0.80[EUR][1000 genomes]
rs72636670	0.80[EUR][1000 genomes]
rs72636675	0.80[EUR][1000 genomes]
rs72636676	0.80[EUR][1000 genomes]
rs72636678	0.80[EUR][1000 genomes]
rs72636684	0.80[EUR][1000 genomes]
rs72636691	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72636696	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72636698	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72636701	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72636702	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72638307	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72638311	0.99[EUR][1000 genomes]
rs72638312	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72638332	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72638338	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825552	0.95[EUR][1000 genomes]
rs9298228	0.95[EUR][1000 genomes]
rs9298229	0.95[EUR][1000 genomes]
rs964011	0.95[EUR][1000 genomes]
rs967109	0.88[EUR][1000 genomes]
rs967110	0.88[EUR][1000 genomes]
rs967116	0.85[EUR][1000 genomes]
rs986450	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9886451	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3360583	chr8:50780826-50781654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50775200-50782200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:50781400-50783400	Enhancers	Dnd41	blood

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