Variant report

Variant	rs1906014
Chromosome Location	chr8:50775865-50775866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10086004	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10089399	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10090657	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10092384	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10107423	0.84[ASN][1000 genomes]
rs10111730	0.84[ASN][1000 genomes]
rs1038534	0.84[ASN][1000 genomes]
rs10504092	0.83[EUR][1000 genomes]
rs1074385	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10957620	0.84[ASN][1000 genomes]
rs11785147	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11786939	0.84[ASN][1000 genomes]
rs12542041	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12547245	0.81[ASN][1000 genomes]
rs12677051	0.84[ASN][1000 genomes]
rs13251355	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13255117	0.84[ASN][1000 genomes]
rs13261298	0.84[ASN][1000 genomes]
rs13267366	0.84[ASN][1000 genomes]
rs1352112	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1352113	0.87[AFR][1000 genomes]
rs1385974	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1385975	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1385976	0.85[EUR][1000 genomes]
rs1385982	0.84[ASN][1000 genomes]
rs1486241	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486242	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486243	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486245	0.81[EUR][1000 genomes]
rs1486251	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486252	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1486253	0.84[ASN][1000 genomes]
rs1486254	0.84[ASN][1000 genomes]
rs1552371	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1552372	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552373	0.84[ASN][1000 genomes]
rs1552375	0.83[ASN][1000 genomes]
rs1552377	0.81[ASN][1000 genomes]
rs1580468	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1601569	0.84[ASN][1000 genomes]
rs16912794	0.84[ASN][1000 genomes]
rs16913087	0.84[ASN][1000 genomes]
rs16913172	0.80[ASN][1000 genomes]
rs16913461	0.84[ASN][1000 genomes]
rs16913472	0.84[ASN][1000 genomes]
rs16913475	0.84[ASN][1000 genomes]
rs17674783	0.83[EUR][1000 genomes]
rs17747294	0.83[EUR][1000 genomes]
rs17747567	0.83[EUR][1000 genomes]
rs17747896	0.83[EUR][1000 genomes]
rs17747929	0.83[EUR][1000 genomes]
rs1906015	0.84[ASN][1000 genomes]
rs1979535	0.84[ASN][1000 genomes]
rs1994344	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2129162	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2129164	0.84[ASN][1000 genomes]
rs2129165	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2385544	0.83[EUR][1000 genomes]
rs2385545	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385546	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385547	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385548	0.85[EUR][1000 genomes]
rs4339657	0.83[ASN][1000 genomes]
rs4377975	0.82[EUR][1000 genomes]
rs4383988	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4584153	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4873113	0.84[ASN][1000 genomes]
rs4873114	0.84[ASN][1000 genomes]
rs4873116	0.84[ASN][1000 genomes]
rs4873382	0.83[ASN][1000 genomes]
rs4873383	0.84[ASN][1000 genomes]
rs4873388	0.84[ASN][1000 genomes]
rs4873391	0.84[ASN][1000 genomes]
rs55636909	0.83[ASN][1000 genomes]
rs55920504	0.82[EUR][1000 genomes]
rs56659775	0.84[ASN][1000 genomes]
rs57462717	0.84[ASN][1000 genomes]
rs57585353	0.83[EUR][1000 genomes]
rs58597929	0.82[EUR][1000 genomes]
rs58764084	0.84[ASN][1000 genomes]
rs59379959	0.84[ASN][1000 genomes]
rs59405147	0.82[EUR][1000 genomes]
rs59848488	0.84[ASN][1000 genomes]
rs60061614	0.83[EUR][1000 genomes]
rs60213702	0.84[ASN][1000 genomes]
rs60631955	0.84[ASN][1000 genomes]
rs61662535	0.84[ASN][1000 genomes]
rs6472721	0.84[ASN][1000 genomes]
rs6994224	0.84[ASN][1000 genomes]
rs7008924	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7013903	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72638307	0.83[EUR][1000 genomes]
rs72638311	0.83[EUR][1000 genomes]
rs72638312	0.83[EUR][1000 genomes]
rs72638332	0.83[EUR][1000 genomes]
rs72638338	0.82[EUR][1000 genomes]
rs73582706	0.84[ASN][1000 genomes]
rs73582713	0.84[ASN][1000 genomes]
rs73582718	0.83[ASN][1000 genomes]
rs73582724	0.84[ASN][1000 genomes]
rs73582755	0.84[ASN][1000 genomes]
rs73582756	0.84[ASN][1000 genomes]
rs7388392	0.81[ASN][1000 genomes]
rs7825552	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7826013	0.81[ASN][1000 genomes]
rs7828311	0.84[ASN][1000 genomes]
rs9298228	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9298229	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs964011	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9886451	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50775200-50782200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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