Variant report

Variant	rs2385544
Chromosome Location	chr8:50767020-50767021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10086004	0.96[EUR][1000 genomes]
rs10089399	0.96[EUR][1000 genomes]
rs10090657	0.96[EUR][1000 genomes]
rs10092384	0.96[EUR][1000 genomes]
rs1038534	0.80[EUR][1000 genomes]
rs10504092	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1074385	0.96[EUR][1000 genomes]
rs11785147	0.96[EUR][1000 genomes]
rs11989680	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11991730	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11992716	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11992755	0.83[EUR][1000 genomes]
rs12542041	0.96[EUR][1000 genomes]
rs13251355	0.96[EUR][1000 genomes]
rs13267366	0.80[EUR][1000 genomes]
rs1352112	0.96[EUR][1000 genomes]
rs1352113	0.86[EUR][1000 genomes]
rs1352117	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs1385311	0.91[CEU][hapmap]
rs1385974	0.96[EUR][1000 genomes]
rs1385975	0.96[EUR][1000 genomes]
rs1385976	0.96[EUR][1000 genomes]
rs1486241	0.96[EUR][1000 genomes]
rs1486242	0.96[EUR][1000 genomes]
rs1486243	0.96[EUR][1000 genomes]
rs1486245	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1486251	0.96[EUR][1000 genomes]
rs1486252	0.96[EUR][1000 genomes]
rs1552372	0.96[EUR][1000 genomes]
rs1580468	0.96[EUR][1000 genomes]
rs167629	1.00[CEU][hapmap]
rs167630	0.91[CEU][hapmap]
rs17674246	0.83[EUR][1000 genomes]
rs17674389	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17674783	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17747294	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17747567	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17747896	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17747929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182646	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1906013	0.83[EUR][1000 genomes]
rs1906014	0.83[EUR][1000 genomes]
rs1994344	0.80[EUR][1000 genomes]
rs2129162	0.96[EUR][1000 genomes]
rs2129165	0.96[EUR][1000 genomes]
rs2200494	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs223081	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2385545	0.96[EUR][1000 genomes]
rs2385546	0.96[EUR][1000 genomes]
rs2385547	0.96[EUR][1000 genomes]
rs2385548	0.96[EUR][1000 genomes]
rs2449957	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2449958	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2450285	0.85[EUR][1000 genomes]
rs2450288	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2450291	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2628417	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2630550	1.00[CEU][hapmap]
rs318860	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs318862	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs318864	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs318870	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs318871	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs318872	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs318873	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs318875	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs318877	1.00[CEU][hapmap]
rs318884	1.00[CEU][hapmap]
rs318885	1.00[CEU][hapmap]
rs318888	1.00[CEU][hapmap]
rs318890	1.00[CEU][hapmap]
rs318893	0.91[CEU][hapmap]
rs318894	0.89[CEU][hapmap]
rs318902	0.89[CEU][hapmap]
rs318903	0.89[CEU][hapmap]
rs318905	0.91[CEU][hapmap]
rs318906	0.91[CEU][hapmap]
rs318908	0.91[CEU][hapmap]
rs318910	0.89[CEU][hapmap]
rs318911	0.91[CEU][hapmap]
rs318912	0.91[CEU][hapmap]
rs35958802	0.81[EUR][1000 genomes]
rs365318	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs366526	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs380279	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs384406	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs391798	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs402156	0.85[EUR][1000 genomes]
rs406337	0.87[EUR][1000 genomes]
rs415276	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs417918	0.89[CEU][hapmap]
rs4339657	0.80[EUR][1000 genomes]
rs436688	0.86[EUR][1000 genomes]
rs4377975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4383988	0.96[EUR][1000 genomes]
rs4584153	0.96[EUR][1000 genomes]
rs55920504	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56076516	0.84[EUR][1000 genomes]
rs57165932	0.84[EUR][1000 genomes]
rs57585353	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58597929	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59405147	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60061614	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472722	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7008924	0.96[EUR][1000 genomes]
rs7013903	0.96[EUR][1000 genomes]
rs72636668	0.81[EUR][1000 genomes]
rs72636670	0.81[EUR][1000 genomes]
rs72636673	0.80[EUR][1000 genomes]
rs72636675	0.81[EUR][1000 genomes]
rs72636676	0.81[EUR][1000 genomes]
rs72636678	0.81[EUR][1000 genomes]
rs72636684	0.81[EUR][1000 genomes]
rs72636691	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72636696	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72636698	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72636701	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72636702	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638307	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638311	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638312	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638332	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638338	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7825552	0.96[EUR][1000 genomes]
rs9298228	0.96[EUR][1000 genomes]
rs9298229	0.96[EUR][1000 genomes]
rs964011	0.96[EUR][1000 genomes]
rs967109	0.87[EUR][1000 genomes]
rs967110	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs967116	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs986450	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9886451	0.96[EUR][1000 genomes]
rs993552	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50767000-50772800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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