Variant report

Variant	rs402156
Chromosome Location	chr8:50839143-50839144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10086004	0.82[EUR][1000 genomes]
rs10089399	0.82[EUR][1000 genomes]
rs10090657	0.82[EUR][1000 genomes]
rs10092384	0.82[EUR][1000 genomes]
rs10504092	0.85[EUR][1000 genomes]
rs1074385	0.83[EUR][1000 genomes]
rs11785147	0.82[EUR][1000 genomes]
rs12542041	0.82[EUR][1000 genomes]
rs13251355	0.83[EUR][1000 genomes]
rs1352112	0.82[EUR][1000 genomes]
rs1352117	0.91[EUR][1000 genomes]
rs1385974	0.82[EUR][1000 genomes]
rs1385975	0.82[EUR][1000 genomes]
rs1385976	0.81[EUR][1000 genomes]
rs1486241	0.82[EUR][1000 genomes]
rs1486242	0.82[EUR][1000 genomes]
rs1486243	0.82[EUR][1000 genomes]
rs1486245	0.83[EUR][1000 genomes]
rs1486251	0.82[EUR][1000 genomes]
rs1486252	0.82[EUR][1000 genomes]
rs1552372	0.82[EUR][1000 genomes]
rs1580468	0.83[EUR][1000 genomes]
rs167629	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs172758	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17674783	0.85[EUR][1000 genomes]
rs17747294	0.85[EUR][1000 genomes]
rs17747567	0.85[EUR][1000 genomes]
rs17747896	0.85[EUR][1000 genomes]
rs17747929	0.85[EUR][1000 genomes]
rs182646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2129162	0.83[EUR][1000 genomes]
rs2129165	0.83[EUR][1000 genomes]
rs2200494	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs223081	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2385544	0.85[EUR][1000 genomes]
rs2385545	0.82[EUR][1000 genomes]
rs2385546	0.83[EUR][1000 genomes]
rs2385547	0.83[EUR][1000 genomes]
rs2385548	0.83[EUR][1000 genomes]
rs2449957	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2449958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2449959	0.84[EUR][1000 genomes]
rs2450285	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2450288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2450291	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2628417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2630550	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs318860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs318862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs318870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs318871	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs318872	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs318873	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs318875	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs318877	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs318884	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318885	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318888	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318890	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs318893	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs318894	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs318902	0.81[AFR][1000 genomes]
rs365318	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs366526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs380279	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs384406	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs391798	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs406337	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs415276	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs417918	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs436688	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4377975	0.86[EUR][1000 genomes]
rs4383988	0.82[EUR][1000 genomes]
rs4584153	0.82[EUR][1000 genomes]
rs55920504	0.86[EUR][1000 genomes]
rs57585353	0.85[EUR][1000 genomes]
rs58597929	0.86[EUR][1000 genomes]
rs59405147	0.84[EUR][1000 genomes]
rs60061614	0.85[EUR][1000 genomes]
rs7008924	0.82[EUR][1000 genomes]
rs7013903	0.82[EUR][1000 genomes]
rs72638307	0.85[EUR][1000 genomes]
rs72638311	0.85[EUR][1000 genomes]
rs72638312	0.85[EUR][1000 genomes]
rs72638332	0.85[EUR][1000 genomes]
rs72638338	0.86[EUR][1000 genomes]
rs7825552	0.82[EUR][1000 genomes]
rs9298228	0.82[EUR][1000 genomes]
rs9298229	0.82[EUR][1000 genomes]
rs964011	0.82[EUR][1000 genomes]
rs967109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs967110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs967116	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9886451	0.82[EUR][1000 genomes]
rs993552	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50832000-50841800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:50836600-50841600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:50838600-50854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:50838800-50853200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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