Variant report

Variant	rs72636676
Chromosome Location	chr8:50716438-50716439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50707630..50710202-chr8:50714425..50717353,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10107423	0.96[EUR][1000 genomes]
rs10111730	0.95[EUR][1000 genomes]
rs1038534	0.93[EUR][1000 genomes]
rs10504092	0.81[EUR][1000 genomes]
rs10957620	0.96[EUR][1000 genomes]
rs11782597	0.95[EUR][1000 genomes]
rs11989680	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11991730	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11992716	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11992755	0.96[EUR][1000 genomes]
rs12677051	0.94[EUR][1000 genomes]
rs13267366	0.93[EUR][1000 genomes]
rs1486245	0.81[EUR][1000 genomes]
rs1486253	0.94[EUR][1000 genomes]
rs17674246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17674389	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17674783	0.81[EUR][1000 genomes]
rs17747294	0.81[EUR][1000 genomes]
rs17747567	0.81[EUR][1000 genomes]
rs17747896	0.81[EUR][1000 genomes]
rs17747929	0.81[EUR][1000 genomes]
rs1906013	0.96[EUR][1000 genomes]
rs1979535	0.96[EUR][1000 genomes]
rs1979536	0.96[EUR][1000 genomes]
rs1994344	0.93[EUR][1000 genomes]
rs2385544	0.81[EUR][1000 genomes]
rs35958802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4339657	0.93[EUR][1000 genomes]
rs4377975	0.80[EUR][1000 genomes]
rs55920504	0.80[EUR][1000 genomes]
rs56076516	0.97[EUR][1000 genomes]
rs57165932	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57585353	0.81[EUR][1000 genomes]
rs58597929	0.80[EUR][1000 genomes]
rs59405147	0.80[EUR][1000 genomes]
rs60061614	0.81[EUR][1000 genomes]
rs60311298	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6472722	0.98[EUR][1000 genomes]
rs72636668	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636670	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636673	0.99[EUR][1000 genomes]
rs72636675	1.00[EUR][1000 genomes]
rs72636678	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636684	1.00[EUR][1000 genomes]
rs72636691	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636696	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636698	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636701	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636702	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72638307	0.81[EUR][1000 genomes]
rs72638311	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72638312	0.81[EUR][1000 genomes]
rs72638332	0.81[EUR][1000 genomes]
rs72638338	0.80[EUR][1000 genomes]
rs986450	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50708600-50717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:50710400-50719600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:50711000-50716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:50712600-50719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:50712800-50719600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:50715400-50716800	Enhancers	HMEC	breast

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