Variant report

Variant	rs72636702
Chromosome Location	chr8:50749053-50749054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10086004	0.81[EUR][1000 genomes]
rs10089399	0.81[EUR][1000 genomes]
rs10090657	0.81[EUR][1000 genomes]
rs10092384	0.81[EUR][1000 genomes]
rs10107423	0.93[EUR][1000 genomes]
rs10111730	0.92[EUR][1000 genomes]
rs1038534	0.96[EUR][1000 genomes]
rs10504092	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1074385	0.80[EUR][1000 genomes]
rs10957620	0.93[EUR][1000 genomes]
rs11782597	0.92[EUR][1000 genomes]
rs11785147	0.81[EUR][1000 genomes]
rs11989680	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991730	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992716	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992755	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12542041	0.81[EUR][1000 genomes]
rs12677051	0.91[EUR][1000 genomes]
rs13251355	0.80[EUR][1000 genomes]
rs13267366	0.96[EUR][1000 genomes]
rs1352112	0.81[EUR][1000 genomes]
rs1385974	0.81[EUR][1000 genomes]
rs1385975	0.81[EUR][1000 genomes]
rs1385976	0.80[EUR][1000 genomes]
rs1486241	0.81[EUR][1000 genomes]
rs1486242	0.81[EUR][1000 genomes]
rs1486243	0.81[EUR][1000 genomes]
rs1486245	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486251	0.81[EUR][1000 genomes]
rs1486252	0.81[EUR][1000 genomes]
rs1486253	0.95[EUR][1000 genomes]
rs1552372	0.81[EUR][1000 genomes]
rs1580468	0.80[EUR][1000 genomes]
rs17674246	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17674389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17674783	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747294	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747567	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747896	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747929	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1906013	0.99[EUR][1000 genomes]
rs1979535	0.93[EUR][1000 genomes]
rs1979536	0.93[EUR][1000 genomes]
rs1994344	0.96[EUR][1000 genomes]
rs2129162	0.80[EUR][1000 genomes]
rs2129165	0.80[EUR][1000 genomes]
rs2385544	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2385545	0.81[EUR][1000 genomes]
rs2385546	0.80[EUR][1000 genomes]
rs2385547	0.80[EUR][1000 genomes]
rs2385548	0.80[EUR][1000 genomes]
rs35958802	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4339657	0.96[EUR][1000 genomes]
rs4377975	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4383988	0.81[EUR][1000 genomes]
rs4584153	0.81[EUR][1000 genomes]
rs55920504	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56076516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165932	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57585353	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58597929	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59405147	0.83[EUR][1000 genomes]
rs60061614	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60311298	0.90[EUR][1000 genomes]
rs6472722	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7008924	0.81[EUR][1000 genomes]
rs7013903	0.81[EUR][1000 genomes]
rs72636668	0.97[EUR][1000 genomes]
rs72636670	0.97[EUR][1000 genomes]
rs72636673	0.96[EUR][1000 genomes]
rs72636675	0.97[EUR][1000 genomes]
rs72636676	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636678	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636684	0.97[EUR][1000 genomes]
rs72636691	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636696	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636698	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638307	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638311	0.84[EUR][1000 genomes]
rs72638312	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638332	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638338	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7825552	0.81[EUR][1000 genomes]
rs9298228	0.81[EUR][1000 genomes]
rs9298229	0.81[EUR][1000 genomes]
rs964011	0.81[EUR][1000 genomes]
rs986450	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886451	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50747600-50749400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50748400-50752400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:50748600-50754000	Weak transcription	Liver	Liver
4	chr8:50748800-50749200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links