Variant report

Variant	rs72636684
Chromosome Location	chr8:50729328-50729329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10107423	0.96[EUR][1000 genomes]
rs10111730	0.95[EUR][1000 genomes]
rs1038534	0.93[EUR][1000 genomes]
rs10504092	0.81[EUR][1000 genomes]
rs10957620	0.96[EUR][1000 genomes]
rs11782597	0.95[EUR][1000 genomes]
rs11989680	0.97[EUR][1000 genomes]
rs11991730	0.97[EUR][1000 genomes]
rs11992716	0.97[EUR][1000 genomes]
rs11992755	0.96[EUR][1000 genomes]
rs12677051	0.94[EUR][1000 genomes]
rs13267366	0.93[EUR][1000 genomes]
rs1486245	0.81[EUR][1000 genomes]
rs1486253	0.94[EUR][1000 genomes]
rs17674246	0.98[EUR][1000 genomes]
rs17674389	0.97[EUR][1000 genomes]
rs17674783	0.81[EUR][1000 genomes]
rs17747294	0.81[EUR][1000 genomes]
rs17747567	0.81[EUR][1000 genomes]
rs17747896	0.81[EUR][1000 genomes]
rs17747929	0.81[EUR][1000 genomes]
rs1906013	0.96[EUR][1000 genomes]
rs1979535	0.96[EUR][1000 genomes]
rs1979536	0.96[EUR][1000 genomes]
rs1994344	0.93[EUR][1000 genomes]
rs2385544	0.81[EUR][1000 genomes]
rs35958802	1.00[EUR][1000 genomes]
rs4339657	0.93[EUR][1000 genomes]
rs4377975	0.80[EUR][1000 genomes]
rs55920504	0.80[EUR][1000 genomes]
rs56076516	0.97[EUR][1000 genomes]
rs57165932	0.97[EUR][1000 genomes]
rs57585353	0.81[EUR][1000 genomes]
rs58597929	0.80[EUR][1000 genomes]
rs59405147	0.80[EUR][1000 genomes]
rs60061614	0.81[EUR][1000 genomes]
rs60311298	0.93[EUR][1000 genomes]
rs6472722	0.98[EUR][1000 genomes]
rs72636668	1.00[EUR][1000 genomes]
rs72636670	1.00[EUR][1000 genomes]
rs72636673	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72636675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636676	1.00[EUR][1000 genomes]
rs72636678	1.00[EUR][1000 genomes]
rs72636691	0.97[EUR][1000 genomes]
rs72636696	0.97[EUR][1000 genomes]
rs72636698	0.97[EUR][1000 genomes]
rs72636701	0.97[EUR][1000 genomes]
rs72636702	0.97[EUR][1000 genomes]
rs72638307	0.81[EUR][1000 genomes]
rs72638311	0.81[EUR][1000 genomes]
rs72638312	0.81[EUR][1000 genomes]
rs72638332	0.81[EUR][1000 genomes]
rs72638338	0.80[EUR][1000 genomes]
rs986450	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50725000-50729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50725200-50729400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:50728400-50730000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:50728400-50730000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:50728400-50730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:50728400-50731200	Enhancers	HMEC	breast
8	chr8:50728600-50729800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:50728600-50729800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:50728600-50731000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:50728600-50731000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:50728600-50731400	Enhancers	Hela-S3	cervix
13	chr8:50728600-50731400	Enhancers	NHDF-Ad	bronchial
14	chr8:50728800-50730000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:50729000-50729400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:50729000-50729400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:50729000-50729800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:50729000-50730000	Enhancers	NH-A	brain
19	chr8:50729200-50729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:50729200-50729800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr8:50729200-50729800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr8:50729200-50729800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:50729200-50729800	Enhancers	NHEK	skin
24	chr8:50729200-50730000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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