Variant report

Variant	rs11782597
Chromosome Location	chr8:50720470-50720471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10086004	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10089399	0.81[EUR][1000 genomes]
rs10090657	0.81[EUR][1000 genomes]
rs10092384	0.81[EUR][1000 genomes]
rs10107423	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10111730	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1038534	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10957620	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11785147	0.81[EUR][1000 genomes]
rs11989680	0.92[EUR][1000 genomes]
rs11991730	0.92[EUR][1000 genomes]
rs11992716	0.92[EUR][1000 genomes]
rs11992755	0.91[EUR][1000 genomes]
rs12542041	0.81[EUR][1000 genomes]
rs12545695	0.81[ASN][1000 genomes]
rs12550124	0.82[AMR][1000 genomes]
rs12677051	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13267366	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1352112	0.81[EUR][1000 genomes]
rs1385974	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1385975	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1385976	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1385980	0.82[ASN][1000 genomes]
rs1486241	0.81[EUR][1000 genomes]
rs1486242	0.81[EUR][1000 genomes]
rs1486243	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1486251	0.81[EUR][1000 genomes]
rs1486252	0.81[EUR][1000 genomes]
rs1486253	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1552372	0.81[EUR][1000 genomes]
rs1552378	0.81[ASN][1000 genomes]
rs1552379	0.81[ASN][1000 genomes]
rs17674246	0.93[EUR][1000 genomes]
rs17674389	0.92[EUR][1000 genomes]
rs1906013	0.91[EUR][1000 genomes]
rs1979535	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1979536	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994344	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2385545	0.81[EUR][1000 genomes]
rs2385548	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35958802	0.95[EUR][1000 genomes]
rs4339657	0.96[EUR][1000 genomes]
rs4383988	0.81[EUR][1000 genomes]
rs4457345	0.82[AMR][1000 genomes]
rs4584153	0.81[EUR][1000 genomes]
rs4599827	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4873376	0.81[AMR][1000 genomes]
rs56076516	0.92[EUR][1000 genomes]
rs57165932	0.92[EUR][1000 genomes]
rs60311298	0.88[EUR][1000 genomes]
rs6472722	0.93[EUR][1000 genomes]
rs7008449	0.81[ASN][1000 genomes]
rs7008924	0.81[EUR][1000 genomes]
rs7013903	0.81[EUR][1000 genomes]
rs72636668	0.95[EUR][1000 genomes]
rs72636670	0.95[EUR][1000 genomes]
rs72636673	0.94[EUR][1000 genomes]
rs72636675	0.95[EUR][1000 genomes]
rs72636676	0.95[EUR][1000 genomes]
rs72636678	0.95[EUR][1000 genomes]
rs72636684	0.95[EUR][1000 genomes]
rs72636691	0.92[EUR][1000 genomes]
rs72636696	0.92[EUR][1000 genomes]
rs72636698	0.92[EUR][1000 genomes]
rs72636701	0.92[EUR][1000 genomes]
rs72636702	0.92[EUR][1000 genomes]
rs7825552	0.81[EUR][1000 genomes]
rs9298228	0.81[EUR][1000 genomes]
rs9298229	0.81[EUR][1000 genomes]
rs964011	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs986450	0.92[EUR][1000 genomes]
rs9886451	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:50719400-50720600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:50719600-50721000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:50720000-50721000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:50720000-50724000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:50720000-50724400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:50720000-50725000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:50720200-50723800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:50720200-50724200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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