Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10107423	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10111730	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1038534	0.80[EUR][1000 genomes]
rs10957620	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11782597	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12542687	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12550124	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12677051	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13267366	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1486253	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1979535	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1979536	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1994344	0.80[EUR][1000 genomes]
rs4242455	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4339657	0.80[EUR][1000 genomes]
rs4389954	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4457345	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4507777	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4873376	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873379	0.81[EUR][1000 genomes]
rs60311298	0.84[EUR][1000 genomes]
rs7463456	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7831807	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50704000-50704200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:50704000-50704600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:50704000-50704800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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