Variant report

Variant	rs1979536
Chromosome Location	chr8:50727379-50727380
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10086004	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10089399	0.82[EUR][1000 genomes]
rs10090657	0.82[EUR][1000 genomes]
rs10092384	0.82[EUR][1000 genomes]
rs10107423	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10112215	0.87[JPT][hapmap]
rs10112818	0.88[JPT][hapmap]
rs1023979	0.82[JPT][hapmap]
rs1038534	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504093	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1074385	0.81[EUR][1000 genomes]
rs10957620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957739	0.81[JPT][hapmap]
rs1157932	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11777957	0.88[JPT][hapmap]
rs11782597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783503	0.87[JPT][hapmap]
rs11783631	0.87[JPT][hapmap]
rs11785147	0.82[EUR][1000 genomes]
rs11989680	0.93[EUR][1000 genomes]
rs11991730	0.93[EUR][1000 genomes]
rs11992716	0.93[EUR][1000 genomes]
rs11992755	0.92[EUR][1000 genomes]
rs12541363	0.87[JPT][hapmap]
rs12542041	0.82[EUR][1000 genomes]
rs12545695	0.81[ASN][1000 genomes]
rs12550124	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12677051	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13251355	0.81[EUR][1000 genomes]
rs13264385	1.00[JPT][hapmap]
rs13267366	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13273334	0.82[JPT][hapmap]
rs1344326	0.87[JPT][hapmap]
rs1352112	0.82[EUR][1000 genomes]
rs1352114	0.82[JPT][hapmap]
rs1352117	0.91[CEU][hapmap]
rs1385974	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1385975	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1385976	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1385980	0.82[ASN][1000 genomes]
rs1486241	0.82[EUR][1000 genomes]
rs1486242	0.82[EUR][1000 genomes]
rs1486243	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486251	0.82[EUR][1000 genomes]
rs1486252	0.82[EUR][1000 genomes]
rs1486253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1486258	1.00[JPT][hapmap]
rs1552372	0.82[EUR][1000 genomes]
rs1552378	0.81[ASN][1000 genomes]
rs1552379	0.81[ASN][1000 genomes]
rs1552380	0.89[JPT][hapmap]
rs1580468	0.81[EUR][1000 genomes]
rs17674246	0.94[EUR][1000 genomes]
rs17674389	0.93[EUR][1000 genomes]
rs1906013	0.92[EUR][1000 genomes]
rs1979535	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994344	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2015043	0.87[JPT][hapmap]
rs2129161	0.88[JPT][hapmap]
rs2129162	0.81[EUR][1000 genomes]
rs2129165	0.81[EUR][1000 genomes]
rs2129169	0.88[JPT][hapmap]
rs2170953	1.00[JPT][hapmap]
rs2200494	0.81[CEU][hapmap]
rs2220157	0.88[JPT][hapmap]
rs223081	0.84[CEU][hapmap]
rs2385545	0.82[EUR][1000 genomes]
rs2385546	0.81[EUR][1000 genomes]
rs2385547	0.81[EUR][1000 genomes]
rs2385548	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2385554	1.00[JPT][hapmap]
rs2385696	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2385697	1.00[JPT][hapmap]
rs2449957	0.84[CEU][hapmap]
rs2449963	0.81[JPT][hapmap]
rs2450291	0.89[CEU][hapmap]
rs318851	1.00[JPT][hapmap]
rs318853	1.00[JPT][hapmap]
rs318860	0.81[CEU][hapmap]
rs318867	0.82[JPT][hapmap]
rs318872	0.84[CEU][hapmap]
rs318873	0.91[CEU][hapmap]
rs318875	0.84[CEU][hapmap]
rs318885	0.81[CEU][hapmap]
rs318890	0.81[CEU][hapmap]
rs318913	0.81[JPT][hapmap]
rs35958802	0.96[EUR][1000 genomes]
rs365318	0.81[CEU][hapmap]
rs3812426	1.00[JPT][hapmap]
rs415276	0.84[CEU][hapmap]
rs4242456	0.88[JPT][hapmap]
rs4339657	0.97[EUR][1000 genomes]
rs4383988	0.82[EUR][1000 genomes]
rs4389954	0.81[EUR][1000 genomes]
rs4457345	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4460388	1.00[JPT][hapmap]
rs4507777	0.81[EUR][1000 genomes]
rs4584153	0.82[EUR][1000 genomes]
rs4599827	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4873120	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4873123	0.88[JPT][hapmap]
rs4873367	0.81[JPT][hapmap]
rs4873376	0.81[AMR][1000 genomes]
rs56076516	0.93[EUR][1000 genomes]
rs57165932	0.93[EUR][1000 genomes]
rs60311298	0.89[EUR][1000 genomes]
rs6472722	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs6991925	0.89[JPT][hapmap]
rs7008449	0.81[ASN][1000 genomes]
rs7008924	0.82[EUR][1000 genomes]
rs7010915	0.87[JPT][hapmap]
rs7013903	0.82[EUR][1000 genomes]
rs7014520	0.87[JPT][hapmap]
rs72636668	0.96[EUR][1000 genomes]
rs72636670	0.96[EUR][1000 genomes]
rs72636673	0.95[EUR][1000 genomes]
rs72636675	0.96[EUR][1000 genomes]
rs72636676	0.96[EUR][1000 genomes]
rs72636678	0.96[EUR][1000 genomes]
rs72636684	0.96[EUR][1000 genomes]
rs72636691	0.93[EUR][1000 genomes]
rs72636696	0.93[EUR][1000 genomes]
rs72636698	0.93[EUR][1000 genomes]
rs72636701	0.93[EUR][1000 genomes]
rs72636702	0.93[EUR][1000 genomes]
rs7825552	0.82[EUR][1000 genomes]
rs7828900	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs7833377	0.82[JPT][hapmap]
rs923058	0.82[JPT][hapmap]
rs923060	1.00[JPT][hapmap]
rs9298228	0.82[EUR][1000 genomes]
rs9298229	0.82[EUR][1000 genomes]
rs931293	0.88[JPT][hapmap]
rs931294	0.88[JPT][hapmap]
rs964011	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9643689	0.81[JPT][hapmap]
rs9643692	0.81[JPT][hapmap]
rs967116	0.81[CEU][hapmap]
rs971926	0.87[JPT][hapmap]
rs986450	0.93[EUR][1000 genomes]
rs9886451	0.82[EUR][1000 genomes]
rs993553	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50725000-50729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50725200-50728400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:50725200-50729000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:50725200-50729000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:50725200-50729200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:50725200-50729400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:50725400-50729200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:50725800-50728600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:50725800-50728600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:50726000-50728400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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