Variant report

Variant	rs7828900
Chromosome Location	chr8:50855547-50855548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10096242	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10504093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957679	0.91[EUR][1000 genomes]
rs10957681	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957682	0.91[EUR][1000 genomes]
rs1157932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773979	0.95[ASN][1000 genomes]
rs11776388	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11777957	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11778027	0.96[EUR][1000 genomes]
rs11781675	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs11782772	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11783503	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11783607	0.93[AMR][1000 genomes]
rs11783631	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11784278	0.96[EUR][1000 genomes]
rs11784738	0.96[EUR][1000 genomes]
rs11786880	1.00[EUR][1000 genomes]
rs11787050	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12542536	0.82[EUR][1000 genomes]
rs12545695	0.92[EUR][1000 genomes]
rs12547245	1.00[EUR][1000 genomes]
rs13264385	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs13267366	0.84[CHB][hapmap]
rs1344326	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1385980	0.92[EUR][1000 genomes]
rs1486258	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs1486263	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552377	1.00[EUR][1000 genomes]
rs1552379	0.92[EUR][1000 genomes]
rs1552380	0.81[ASN][1000 genomes]
rs1586364	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16913687	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16914039	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs170331	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1843607	0.88[ASN][1000 genomes]
rs2170953	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2247368	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2385554	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs2385696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385697	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs2449960	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2449961	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2450286	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450287	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2450290	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28869911	0.84[ASN][1000 genomes]
rs318850	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318851	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs318853	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs318854	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs318858	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs318859	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs318861	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs318874	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs379601	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3812426	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs404309	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs412929	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242456	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4460388	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs451034	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs453906	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4634657	0.91[EUR][1000 genomes]
rs4873118	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873121	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4873123	1.00[CEU][hapmap]
rs4873392	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873401	0.96[EUR][1000 genomes]
rs55780592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55879210	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56040457	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59240550	0.96[EUR][1000 genomes]
rs59679832	0.96[EUR][1000 genomes]
rs6472721	0.84[CHB][hapmap]
rs6472838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472839	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6984738	0.82[ASN][1000 genomes]
rs6988440	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7002291	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7002909	0.82[ASN][1000 genomes]
rs7003221	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7004973	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7008449	0.92[EUR][1000 genomes]
rs73676077	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7388392	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833377	1.00[CEU][hapmap]
rs923060	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs9643685	0.95[ASN][1000 genomes]
rs967107	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs974740	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs974742	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs993553	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50848800-50857800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:50854800-50857800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50855200-50855600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:50855200-50855800	Enhancers	Liver	Liver
5	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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