Variant report

Variant	rs11784278
Chromosome Location	chr8:50887386-50887387
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10112215	0.96[ASN][1000 genomes]
rs10504093	0.96[EUR][1000 genomes]
rs10957679	0.87[EUR][1000 genomes]
rs10957682	0.87[EUR][1000 genomes]
rs10957739	0.81[ASN][1000 genomes]
rs10957741	0.81[ASN][1000 genomes]
rs1157932	0.96[EUR][1000 genomes]
rs11776388	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777957	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11778027	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11783503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11783631	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784738	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11786880	0.96[EUR][1000 genomes]
rs11787050	0.87[EUR][1000 genomes]
rs12541363	0.90[ASN][1000 genomes]
rs12545695	0.88[EUR][1000 genomes]
rs12547245	0.96[EUR][1000 genomes]
rs13266009	0.81[ASN][1000 genomes]
rs13273334	0.81[ASN][1000 genomes]
rs1344326	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1385980	0.88[EUR][1000 genomes]
rs1484805	0.81[ASN][1000 genomes]
rs1486263	0.96[EUR][1000 genomes]
rs1552377	0.96[EUR][1000 genomes]
rs1552379	0.88[EUR][1000 genomes]
rs1586364	0.87[EUR][1000 genomes]
rs16913687	0.87[EUR][1000 genomes]
rs16914039	0.96[EUR][1000 genomes]
rs170331	0.91[EUR][1000 genomes]
rs2015043	0.88[ASN][1000 genomes]
rs2086888	0.81[ASN][1000 genomes]
rs2129161	0.88[ASN][1000 genomes]
rs2129169	0.96[ASN][1000 genomes]
rs2220157	0.90[ASN][1000 genomes]
rs2385696	0.96[EUR][1000 genomes]
rs2385700	0.81[ASN][1000 genomes]
rs2449960	0.87[EUR][1000 genomes]
rs2450286	0.83[EUR][1000 genomes]
rs2450287	0.83[EUR][1000 genomes]
rs2450290	0.83[EUR][1000 genomes]
rs318850	0.87[EUR][1000 genomes]
rs318858	0.91[EUR][1000 genomes]
rs318859	0.91[EUR][1000 genomes]
rs318861	0.91[EUR][1000 genomes]
rs318874	0.96[EUR][1000 genomes]
rs318913	0.83[ASN][1000 genomes]
rs4242456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4634657	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873118	0.87[EUR][1000 genomes]
rs4873119	0.87[EUR][1000 genomes]
rs4873120	0.96[EUR][1000 genomes]
rs4873121	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873392	0.87[EUR][1000 genomes]
rs4873401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780592	0.96[EUR][1000 genomes]
rs55879210	0.87[EUR][1000 genomes]
rs56040457	0.96[EUR][1000 genomes]
rs59240550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59679832	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472838	0.96[EUR][1000 genomes]
rs6472839	0.88[EUR][1000 genomes]
rs6988440	0.87[EUR][1000 genomes]
rs7004973	0.91[EUR][1000 genomes]
rs7008449	0.88[EUR][1000 genomes]
rs7010915	0.96[ASN][1000 genomes]
rs7014520	0.96[ASN][1000 genomes]
rs73676077	0.87[EUR][1000 genomes]
rs7388392	0.96[EUR][1000 genomes]
rs7828900	0.96[EUR][1000 genomes]
rs923058	0.81[ASN][1000 genomes]
rs931293	0.84[ASN][1000 genomes]
rs931294	0.96[ASN][1000 genomes]
rs9643689	0.81[ASN][1000 genomes]
rs9643692	0.81[ASN][1000 genomes]
rs967107	0.83[EUR][1000 genomes]
rs971926	0.90[ASN][1000 genomes]
rs974740	0.83[EUR][1000 genomes]
rs974742	0.87[EUR][1000 genomes]
rs993553	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv34788	chr8:50873247-50965438	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3479183	chr8:50873277-50965062	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1033098	chr8:50873293-50965692	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757272	chr8:50873293-50968942	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3479184	chr8:50873317-50965027	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3479185	chr8:50873317-50965027	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3692982	chr8:50875494-50959622	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1023258	chr8:50877934-50964286	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv818624	chr8:50882830-50945075	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50876000-50889200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50887000-50887600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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