Variant report

Variant	rs11786880
Chromosome Location	chr8:50865341-50865342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10096242	0.84[EUR][1000 genomes]
rs10504093	1.00[EUR][1000 genomes]
rs10957679	0.91[EUR][1000 genomes]
rs10957681	0.84[EUR][1000 genomes]
rs10957682	0.91[EUR][1000 genomes]
rs1157932	1.00[EUR][1000 genomes]
rs11776388	0.96[EUR][1000 genomes]
rs11777957	0.96[EUR][1000 genomes]
rs11778027	0.96[EUR][1000 genomes]
rs11782772	0.84[EUR][1000 genomes]
rs11783503	0.96[EUR][1000 genomes]
rs11783631	0.96[EUR][1000 genomes]
rs11784278	0.96[EUR][1000 genomes]
rs11784738	0.96[EUR][1000 genomes]
rs11787050	0.91[EUR][1000 genomes]
rs12542536	0.82[EUR][1000 genomes]
rs12545695	0.92[EUR][1000 genomes]
rs12547245	1.00[EUR][1000 genomes]
rs1344326	0.96[EUR][1000 genomes]
rs1385980	0.92[EUR][1000 genomes]
rs1486263	1.00[EUR][1000 genomes]
rs1552377	1.00[EUR][1000 genomes]
rs1552379	0.92[EUR][1000 genomes]
rs1586364	0.91[EUR][1000 genomes]
rs16913687	0.91[EUR][1000 genomes]
rs16914039	1.00[EUR][1000 genomes]
rs170331	0.96[EUR][1000 genomes]
rs2247368	0.84[EUR][1000 genomes]
rs2385696	1.00[EUR][1000 genomes]
rs2449960	0.91[EUR][1000 genomes]
rs2449961	0.84[EUR][1000 genomes]
rs2450286	0.87[EUR][1000 genomes]
rs2450287	0.87[EUR][1000 genomes]
rs2450290	0.87[EUR][1000 genomes]
rs318850	0.91[EUR][1000 genomes]
rs318851	0.84[EUR][1000 genomes]
rs318853	0.84[EUR][1000 genomes]
rs318858	0.96[EUR][1000 genomes]
rs318859	0.96[EUR][1000 genomes]
rs318861	0.96[EUR][1000 genomes]
rs318874	1.00[EUR][1000 genomes]
rs379601	0.84[EUR][1000 genomes]
rs404309	0.84[EUR][1000 genomes]
rs412929	0.84[EUR][1000 genomes]
rs4242456	0.96[EUR][1000 genomes]
rs451034	0.84[EUR][1000 genomes]
rs453906	0.80[EUR][1000 genomes]
rs4634657	0.91[EUR][1000 genomes]
rs4873118	0.91[EUR][1000 genomes]
rs4873119	0.91[EUR][1000 genomes]
rs4873120	1.00[EUR][1000 genomes]
rs4873121	0.96[EUR][1000 genomes]
rs4873392	0.91[EUR][1000 genomes]
rs4873401	0.96[EUR][1000 genomes]
rs55780592	1.00[EUR][1000 genomes]
rs55879210	0.91[EUR][1000 genomes]
rs56040457	0.91[EUR][1000 genomes]
rs59240550	0.96[EUR][1000 genomes]
rs59679832	0.96[EUR][1000 genomes]
rs6472720	0.86[ASN][1000 genomes]
rs6472723	0.86[ASN][1000 genomes]
rs6472838	1.00[EUR][1000 genomes]
rs6472839	0.92[EUR][1000 genomes]
rs6988440	0.91[EUR][1000 genomes]
rs7002291	0.84[EUR][1000 genomes]
rs7003221	0.84[EUR][1000 genomes]
rs7004973	0.96[EUR][1000 genomes]
rs7008449	0.92[EUR][1000 genomes]
rs73676077	0.91[EUR][1000 genomes]
rs7388392	1.00[EUR][1000 genomes]
rs7828900	1.00[EUR][1000 genomes]
rs967107	0.87[EUR][1000 genomes]
rs974740	0.87[EUR][1000 genomes]
rs974742	0.91[EUR][1000 genomes]
rs993553	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50858400-50865800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:50858400-50870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:50858400-50871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:50860400-50875400	Weak transcription	Fetal Intestine Small	intestine

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