Variant report

Variant	rs6472720
Chromosome Location	chr8:50734527-50734528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11786880	0.86[ASN][1000 genomes]
rs13252756	1.00[EUR][1000 genomes]
rs167631	1.00[CHB][hapmap]
rs16910609	1.00[EUR][1000 genomes]
rs2385698	1.00[CHB][hapmap]
rs28718394	1.00[EUR][1000 genomes]
rs28725275	1.00[EUR][1000 genomes]
rs318915	1.00[CHB][hapmap]
rs318916	1.00[CHB][hapmap]
rs318920	1.00[CHB][hapmap]
rs6472723	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833019	1.00[CHB][hapmap]
rs7842850	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50729800-50734600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50729800-50735200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:50730000-50735000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:50730000-50735200	Weak transcription	NH-A	brain
5	chr8:50730200-50735200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:50730800-50735200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:50731200-50734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:50731200-50735400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:50731400-50735200	Weak transcription	NHDF-Ad	bronchial
10	chr8:50733200-50735400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:50734200-50736200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:50734400-50734800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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