Variant report

Variant	rs318854
Chromosome Location	chr8:50817915-50817916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10096242	0.84[AMR][1000 genomes]
rs10112215	0.86[CHB][hapmap]
rs10504093	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10957679	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10957681	0.88[AMR][1000 genomes]
rs10957682	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1157932	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11777957	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11781675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11782772	0.88[AMR][1000 genomes]
rs11783503	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11783631	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11787050	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12541363	0.84[CHB][hapmap]
rs12542536	0.82[AMR][1000 genomes]
rs12545695	0.88[AMR][1000 genomes]
rs12547245	0.97[AMR][1000 genomes]
rs13264385	0.86[CHB][hapmap]
rs13267366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344326	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1385980	0.83[AMR][1000 genomes]
rs1486258	0.86[CHB][hapmap]
rs1486263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1552377	0.97[AMR][1000 genomes]
rs1552379	0.88[AMR][1000 genomes]
rs1586364	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16913687	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16914039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs170331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2015043	0.86[CHB][hapmap]
rs2129161	0.86[CHB][hapmap]
rs2129169	0.86[CHB][hapmap]
rs2170953	0.86[CHB][hapmap]
rs2220157	0.86[CHB][hapmap]
rs2247368	1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2385554	0.86[CHB][hapmap]
rs2385696	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs2385697	0.86[CHB][hapmap]
rs2449960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2449961	0.84[AMR][1000 genomes]
rs2449962	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2450286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2450287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2450290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2628420	0.95[AMR][1000 genomes]
rs28869911	0.84[ASN][1000 genomes]
rs318850	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs318851	0.86[CHB][hapmap];0.88[AMR][1000 genomes]
rs318853	0.86[CHB][hapmap];0.88[AMR][1000 genomes]
rs318858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs318859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs318861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs318874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs379601	0.88[AMR][1000 genomes]
rs3812426	0.86[CHB][hapmap]
rs404309	0.88[AMR][1000 genomes]
rs404686	0.88[AMR][1000 genomes]
rs412929	0.88[AMR][1000 genomes]
rs4242456	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs4460388	0.86[CHB][hapmap]
rs451034	0.88[AMR][1000 genomes]
rs453906	0.88[AMR][1000 genomes]
rs4873118	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4873119	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4873120	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs4873121	1.00[CEU][hapmap]
rs4873123	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs4873392	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55879210	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6472721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6988440	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7002291	0.88[AMR][1000 genomes]
rs7003221	0.88[AMR][1000 genomes]
rs7004973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7008449	0.88[AMR][1000 genomes]
rs7010915	0.86[CHB][hapmap]
rs7014520	0.86[CHB][hapmap]
rs73676077	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7828900	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7833377	1.00[CEU][hapmap]
rs923060	0.86[CHB][hapmap]
rs931294	0.86[CHB][hapmap]
rs967107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs971926	0.86[CHB][hapmap]
rs974740	0.84[ASN][1000 genomes]
rs974742	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs993553	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50814000-50819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50814000-50819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50816000-50821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:50817000-50818400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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