Variant report

Variant	rs404686
Chromosome Location	chr8:50814559-50814560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10096242	0.95[AMR][1000 genomes]
rs10957679	0.90[AMR][1000 genomes]
rs10957681	1.00[AMR][1000 genomes]
rs10957682	0.90[AMR][1000 genomes]
rs11782772	1.00[AMR][1000 genomes]
rs11783607	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12542536	0.93[AMR][1000 genomes]
rs12545695	1.00[AMR][1000 genomes]
rs12547245	0.90[AMR][1000 genomes]
rs1344326	0.83[AMR][1000 genomes]
rs1385980	0.95[AMR][1000 genomes]
rs1552377	0.90[AMR][1000 genomes]
rs1552379	1.00[AMR][1000 genomes]
rs170331	0.90[AMR][1000 genomes]
rs2247368	0.90[AMR][1000 genomes]
rs2449960	0.90[AMR][1000 genomes]
rs2449961	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2449962	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2450286	0.90[AMR][1000 genomes]
rs2450287	0.90[AMR][1000 genomes]
rs2450290	0.90[AMR][1000 genomes]
rs2628420	0.88[AMR][1000 genomes]
rs318850	0.90[AMR][1000 genomes]
rs318851	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318853	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs318854	0.88[AMR][1000 genomes]
rs318858	0.90[AMR][1000 genomes]
rs318859	0.90[AMR][1000 genomes]
rs318861	0.90[AMR][1000 genomes]
rs318874	0.90[AMR][1000 genomes]
rs379601	1.00[AMR][1000 genomes]
rs404309	1.00[AMR][1000 genomes]
rs412929	1.00[AMR][1000 genomes]
rs451034	1.00[AMR][1000 genomes]
rs453906	1.00[AMR][1000 genomes]
rs6988440	0.90[AMR][1000 genomes]
rs7002291	1.00[AMR][1000 genomes]
rs7003221	1.00[AMR][1000 genomes]
rs7008449	1.00[AMR][1000 genomes]
rs7827777	0.82[AMR][1000 genomes]
rs967107	0.90[AMR][1000 genomes]
rs993553	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50814000-50819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50814000-50819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50814400-50816000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links