Variant report

Variant	rs11781675
Chromosome Location	chr8:50844932-50844933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10112215	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1021202	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1023979	0.93[CEU][hapmap]
rs10504093	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs10957679	0.91[ASN][1000 genomes]
rs10957682	0.91[ASN][1000 genomes]
rs10957739	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10957741	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1157932	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs11773979	0.89[EUR][1000 genomes]
rs11777957	0.86[CHB][hapmap]
rs11783631	0.86[CHB][hapmap]
rs11787050	0.91[ASN][1000 genomes]
rs12541061	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12541363	0.86[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs12547245	0.83[ASN][1000 genomes]
rs13264385	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13267366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13273334	0.80[CEU][hapmap]
rs1352114	0.93[CEU][hapmap]
rs1484805	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1484807	0.92[CEU][hapmap]
rs1484813	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1486258	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1486263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1552377	0.83[ASN][1000 genomes]
rs1552378	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1586364	0.91[ASN][1000 genomes]
rs167631	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs16913687	0.91[ASN][1000 genomes]
rs16914039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs170331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs182646	0.81[EUR][1000 genomes]
rs1843607	0.85[EUR][1000 genomes]
rs186455	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs2015043	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2086888	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2129161	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2129169	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2170953	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2200494	0.81[EUR][1000 genomes]
rs2220157	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs2247368	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2385554	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2385696	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2385697	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2385698	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2385700	0.80[EUR][1000 genomes]
rs2449958	0.81[EUR][1000 genomes]
rs2449960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2449961	0.80[ASN][1000 genomes]
rs2449963	0.92[CEU][hapmap]
rs2450286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2450287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2450288	0.81[EUR][1000 genomes]
rs2450290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2450291	0.81[EUR][1000 genomes]
rs2628417	0.81[EUR][1000 genomes]
rs28869911	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs318850	0.93[ASN][1000 genomes]
rs318851	0.82[ASN][1000 genomes]
rs318853	0.80[ASN][1000 genomes]
rs318854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs318858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318862	0.81[EUR][1000 genomes]
rs318864	0.81[EUR][1000 genomes]
rs318867	0.93[CEU][hapmap]
rs318870	0.80[EUR][1000 genomes]
rs318871	0.80[EUR][1000 genomes]
rs318874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs318913	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs318915	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs318916	0.93[CEU][hapmap]
rs318918	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs318920	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs318923	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs365318	0.81[EUR][1000 genomes]
rs366526	0.81[EUR][1000 genomes]
rs3812426	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs384406	0.81[EUR][1000 genomes]
rs391798	0.81[EUR][1000 genomes]
rs406337	0.81[EUR][1000 genomes]
rs4242456	0.86[CHB][hapmap]
rs436688	0.80[EUR][1000 genomes]
rs4460388	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4873118	0.91[ASN][1000 genomes]
rs4873119	0.91[ASN][1000 genomes]
rs4873120	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs4873123	0.86[CHB][hapmap]
rs4873392	0.91[ASN][1000 genomes]
rs55780592	0.80[ASN][1000 genomes]
rs55879210	0.91[ASN][1000 genomes]
rs6472721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6472838	0.80[ASN][1000 genomes]
rs6984738	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6988440	0.88[ASN][1000 genomes]
rs7002909	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7003721	0.81[ASN][1000 genomes]
rs7004973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7010915	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7014520	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs73676077	0.93[ASN][1000 genomes]
rs7388392	0.83[ASN][1000 genomes]
rs7828900	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs7833019	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs900958	0.84[CEU][hapmap]
rs923058	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs923060	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs931294	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9643685	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9643692	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs967107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs967109	0.81[EUR][1000 genomes]
rs967110	0.81[EUR][1000 genomes]
rs971926	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs974740	0.91[ASN][1000 genomes]
rs974742	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv971234	chr8:50842641-50848642	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50838600-50854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50838800-50853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:50842200-50850400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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