Variant report

Variant	rs72636668
Chromosome Location	chr8:50709306-50709307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50709168..50710848-chr8:50931158..50933465,2	MCF-7	breast:
2	chr8:50707630..50710202-chr8:50714425..50717353,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10107423	0.96[EUR][1000 genomes]
rs10111730	0.95[EUR][1000 genomes]
rs1038534	0.93[EUR][1000 genomes]
rs10504092	0.81[EUR][1000 genomes]
rs10957620	0.96[EUR][1000 genomes]
rs11782597	0.95[EUR][1000 genomes]
rs11989680	0.97[EUR][1000 genomes]
rs11991730	0.97[EUR][1000 genomes]
rs11992716	0.97[EUR][1000 genomes]
rs11992755	0.96[EUR][1000 genomes]
rs12677051	0.94[EUR][1000 genomes]
rs13267366	0.93[EUR][1000 genomes]
rs1486245	0.81[EUR][1000 genomes]
rs1486253	0.94[EUR][1000 genomes]
rs17674246	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17674389	0.97[EUR][1000 genomes]
rs17674783	0.81[EUR][1000 genomes]
rs17747294	0.81[EUR][1000 genomes]
rs17747567	0.81[EUR][1000 genomes]
rs17747896	0.81[EUR][1000 genomes]
rs17747929	0.81[EUR][1000 genomes]
rs1906013	0.96[EUR][1000 genomes]
rs1979535	0.96[EUR][1000 genomes]
rs1979536	0.96[EUR][1000 genomes]
rs1994344	0.93[EUR][1000 genomes]
rs2385544	0.81[EUR][1000 genomes]
rs35958802	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4339657	0.93[EUR][1000 genomes]
rs4377975	0.80[EUR][1000 genomes]
rs55920504	0.80[EUR][1000 genomes]
rs56076516	0.97[EUR][1000 genomes]
rs57165932	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57585353	0.81[EUR][1000 genomes]
rs58597929	0.80[EUR][1000 genomes]
rs59405147	0.80[EUR][1000 genomes]
rs60061614	0.81[EUR][1000 genomes]
rs60311298	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6472722	0.98[EUR][1000 genomes]
rs72636670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636673	0.99[EUR][1000 genomes]
rs72636675	1.00[EUR][1000 genomes]
rs72636676	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636678	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636684	1.00[EUR][1000 genomes]
rs72636691	0.97[EUR][1000 genomes]
rs72636696	0.97[EUR][1000 genomes]
rs72636698	0.97[EUR][1000 genomes]
rs72636701	0.97[EUR][1000 genomes]
rs72636702	0.97[EUR][1000 genomes]
rs72638307	0.81[EUR][1000 genomes]
rs72638311	0.81[EUR][1000 genomes]
rs72638312	0.81[EUR][1000 genomes]
rs72638332	0.81[EUR][1000 genomes]
rs72638338	0.80[EUR][1000 genomes]
rs986450	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50707400-50709600	Enhancers	Hela-S3	cervix
4	chr8:50707400-50711000	Enhancers	HMEC	breast
5	chr8:50707800-50712800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:50708000-50711000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:50708200-50710400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:50708200-50710800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:50708600-50709400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:50708600-50717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:50708800-50710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:50708800-50710800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:50709000-50710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:50709000-50712800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:50709200-50710200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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