Variant report

Variant	rs17674389
Chromosome Location	chr8:50735551-50735552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr8:50735419-50735914	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000253484	TF binding region

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10086004	0.81[EUR][1000 genomes]
rs10089399	0.81[EUR][1000 genomes]
rs10090657	0.81[EUR][1000 genomes]
rs10092384	0.81[EUR][1000 genomes]
rs10107423	0.93[EUR][1000 genomes]
rs10111730	0.92[EUR][1000 genomes]
rs1038534	0.96[EUR][1000 genomes]
rs10504092	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1074385	0.80[EUR][1000 genomes]
rs10957620	0.93[EUR][1000 genomes]
rs11782597	0.92[EUR][1000 genomes]
rs11785147	0.81[EUR][1000 genomes]
rs11989680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992755	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12542041	0.81[EUR][1000 genomes]
rs12677051	0.91[EUR][1000 genomes]
rs13251355	0.80[EUR][1000 genomes]
rs13267366	0.96[EUR][1000 genomes]
rs1352112	0.81[EUR][1000 genomes]
rs1352117	0.81[CEU][hapmap]
rs1385974	0.81[EUR][1000 genomes]
rs1385975	0.81[EUR][1000 genomes]
rs1385976	0.80[EUR][1000 genomes]
rs1486241	0.81[EUR][1000 genomes]
rs1486242	0.81[EUR][1000 genomes]
rs1486243	0.81[EUR][1000 genomes]
rs1486245	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486251	0.81[EUR][1000 genomes]
rs1486252	0.81[EUR][1000 genomes]
rs1486253	0.95[EUR][1000 genomes]
rs1552372	0.81[EUR][1000 genomes]
rs1580468	0.80[EUR][1000 genomes]
rs167629	0.83[CEU][hapmap]
rs17674246	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17674783	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747294	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747567	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747896	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17747929	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs182646	0.83[CEU][hapmap]
rs1906013	0.99[EUR][1000 genomes]
rs1979535	0.93[EUR][1000 genomes]
rs1979536	0.93[EUR][1000 genomes]
rs1994344	0.96[EUR][1000 genomes]
rs2129162	0.80[EUR][1000 genomes]
rs2129165	0.80[EUR][1000 genomes]
rs2200494	0.90[CEU][hapmap]
rs2385544	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2385545	0.81[EUR][1000 genomes]
rs2385546	0.80[EUR][1000 genomes]
rs2385547	0.80[EUR][1000 genomes]
rs2385548	0.80[EUR][1000 genomes]
rs2449958	0.83[CEU][hapmap]
rs2450291	0.89[CEU][hapmap]
rs2628417	0.83[CEU][hapmap]
rs2630550	0.91[CEU][hapmap]
rs318860	0.90[CEU][hapmap]
rs318862	0.83[CEU][hapmap]
rs318864	0.83[CEU][hapmap]
rs318870	0.83[CEU][hapmap]
rs318871	0.83[CEU][hapmap]
rs318873	0.81[CEU][hapmap]
rs318877	0.83[CEU][hapmap]
rs318884	0.83[CEU][hapmap]
rs318885	0.90[CEU][hapmap]
rs318888	0.83[CEU][hapmap]
rs318890	0.90[CEU][hapmap]
rs35958802	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs365318	0.90[CEU][hapmap]
rs366526	0.83[CEU][hapmap]
rs380279	0.83[CEU][hapmap]
rs384406	0.83[CEU][hapmap]
rs391798	0.83[CEU][hapmap]
rs417918	0.89[CEU][hapmap]
rs4339657	0.96[EUR][1000 genomes]
rs4377975	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4383988	0.81[EUR][1000 genomes]
rs4584153	0.81[EUR][1000 genomes]
rs55920504	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56076516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57165932	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57585353	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58597929	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59405147	0.83[EUR][1000 genomes]
rs60061614	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60311298	0.90[EUR][1000 genomes]
rs6472722	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7008924	0.81[EUR][1000 genomes]
rs7013903	0.81[EUR][1000 genomes]
rs72636668	0.97[EUR][1000 genomes]
rs72636670	0.97[EUR][1000 genomes]
rs72636673	0.96[EUR][1000 genomes]
rs72636675	0.97[EUR][1000 genomes]
rs72636676	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636678	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72636684	0.97[EUR][1000 genomes]
rs72636691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72636702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72638307	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638311	0.84[EUR][1000 genomes]
rs72638312	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638332	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72638338	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7825552	0.81[EUR][1000 genomes]
rs9298228	0.81[EUR][1000 genomes]
rs9298229	0.81[EUR][1000 genomes]
rs964011	0.81[EUR][1000 genomes]
rs967110	0.83[CEU][hapmap]
rs967116	0.90[CEU][hapmap]
rs986450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886451	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50734200-50736200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:50734600-50736000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:50734800-50736000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:50735000-50735800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:50735000-50736000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:50735200-50735600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:50735200-50736000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:50735200-50736000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:50735200-50736000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:50735200-50736000	Enhancers	NH-A	brain
11	chr8:50735200-50736200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:50735200-50747600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:50735400-50735600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr8:50735400-50736000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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