Variant report

Variant	rs4242455
Chromosome Location	chr8:50684373-50684374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10086004	0.81[ASN][1000 genomes]
rs10089399	0.81[ASN][1000 genomes]
rs10090657	0.81[ASN][1000 genomes]
rs10092384	0.81[ASN][1000 genomes]
rs10107423	0.81[ASN][1000 genomes]
rs10111730	0.81[ASN][1000 genomes]
rs1038534	0.81[ASN][1000 genomes]
rs10504093	0.81[CHD][hapmap]
rs1074385	0.81[ASN][1000 genomes]
rs10957620	0.81[ASN][1000 genomes]
rs11781675	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11785147	0.81[ASN][1000 genomes]
rs11786939	0.81[ASN][1000 genomes]
rs12542687	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12550124	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677051	0.81[ASN][1000 genomes]
rs13251355	0.81[ASN][1000 genomes]
rs13255117	0.81[ASN][1000 genomes]
rs13261298	0.81[ASN][1000 genomes]
rs13267366	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1352112	0.81[ASN][1000 genomes]
rs1352117	0.90[CEU][hapmap]
rs1385974	0.81[ASN][1000 genomes]
rs1385975	0.81[ASN][1000 genomes]
rs1385982	0.81[ASN][1000 genomes]
rs1390586	0.81[ASN][1000 genomes]
rs1486241	0.81[ASN][1000 genomes]
rs1486242	0.81[ASN][1000 genomes]
rs1486243	0.81[ASN][1000 genomes]
rs1486251	0.81[ASN][1000 genomes]
rs1486252	0.81[ASN][1000 genomes]
rs1486253	0.81[ASN][1000 genomes]
rs1486254	0.81[ASN][1000 genomes]
rs1486258	0.81[CHD][hapmap]
rs1486263	0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs1496311	0.81[ASN][1000 genomes]
rs1552372	0.81[ASN][1000 genomes]
rs1552373	0.81[ASN][1000 genomes]
rs1580468	0.81[ASN][1000 genomes]
rs1601569	0.81[ASN][1000 genomes]
rs167629	0.80[CEU][hapmap]
rs16912794	0.81[ASN][1000 genomes]
rs16913087	0.81[ASN][1000 genomes]
rs16913461	0.81[ASN][1000 genomes]
rs16913472	0.81[ASN][1000 genomes]
rs16913475	0.81[ASN][1000 genomes]
rs16914039	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs170331	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs182646	0.80[CEU][hapmap]
rs1979535	0.81[ASN][1000 genomes]
rs1994344	0.81[ASN][1000 genomes]
rs2129162	0.81[ASN][1000 genomes]
rs2129164	0.81[ASN][1000 genomes]
rs2170953	0.85[CHD][hapmap]
rs2200494	0.80[CEU][hapmap]
rs223081	0.90[CEU][hapmap]
rs2247368	0.85[JPT][hapmap]
rs2385545	0.81[ASN][1000 genomes]
rs2385546	0.81[ASN][1000 genomes]
rs2385547	0.81[ASN][1000 genomes]
rs2449957	0.90[CEU][hapmap]
rs2449958	0.80[CEU][hapmap]
rs2449960	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2450286	0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs2450287	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2450290	0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs2450291	0.86[CEU][hapmap]
rs2628417	0.80[CEU][hapmap]
rs318851	0.85[CHD][hapmap]
rs318853	0.85[CHD][hapmap]
rs318854	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs318858	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs318859	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs318860	0.80[CEU][hapmap]
rs318861	0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs318862	0.80[CEU][hapmap]
rs318864	0.80[CEU][hapmap]
rs318870	0.80[CEU][hapmap]
rs318871	0.80[CEU][hapmap]
rs318872	0.90[CEU][hapmap]
rs318873	0.90[CEU][hapmap]
rs318874	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs318875	0.90[CEU][hapmap]
rs318877	0.80[CEU][hapmap]
rs318884	0.80[CEU][hapmap]
rs318885	0.80[CEU][hapmap]
rs318888	0.80[CEU][hapmap]
rs318890	0.80[CEU][hapmap]
rs35623593	0.81[ASN][1000 genomes]
rs365318	0.80[CEU][hapmap]
rs366526	0.80[CEU][hapmap]
rs380279	0.80[CEU][hapmap]
rs384406	0.80[CEU][hapmap]
rs391798	0.80[CEU][hapmap]
rs415276	0.90[CEU][hapmap]
rs4383988	0.81[ASN][1000 genomes]
rs4389954	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457345	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507777	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584153	0.81[ASN][1000 genomes]
rs4599827	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873113	0.81[ASN][1000 genomes]
rs4873114	0.81[ASN][1000 genomes]
rs4873116	0.81[ASN][1000 genomes]
rs4873376	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873379	0.97[ASN][1000 genomes]
rs4873383	0.81[ASN][1000 genomes]
rs4873388	0.81[ASN][1000 genomes]
rs4873391	0.81[ASN][1000 genomes]
rs56659775	0.81[ASN][1000 genomes]
rs57462717	0.81[ASN][1000 genomes]
rs58764084	0.81[ASN][1000 genomes]
rs59379959	0.81[ASN][1000 genomes]
rs59848488	0.81[ASN][1000 genomes]
rs60213702	0.81[ASN][1000 genomes]
rs60631955	0.81[ASN][1000 genomes]
rs61662535	0.81[ASN][1000 genomes]
rs6472721	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6472722	0.80[CEU][hapmap]
rs6994224	0.81[ASN][1000 genomes]
rs7004973	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7013903	0.81[ASN][1000 genomes]
rs73582706	0.81[ASN][1000 genomes]
rs73582713	0.81[ASN][1000 genomes]
rs73582724	0.81[ASN][1000 genomes]
rs73582755	0.81[ASN][1000 genomes]
rs73582756	0.81[ASN][1000 genomes]
rs73676017	0.83[ASN][1000 genomes]
rs7463456	1.00[ASN][1000 genomes]
rs7825552	0.81[ASN][1000 genomes]
rs7828311	0.81[ASN][1000 genomes]
rs7831807	1.00[ASN][1000 genomes]
rs9298228	0.81[ASN][1000 genomes]
rs9298229	0.81[ASN][1000 genomes]
rs964011	0.81[ASN][1000 genomes]
rs967107	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs967110	0.80[CEU][hapmap]
rs967116	0.80[CEU][hapmap]
rs9886451	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50683800-50684400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr8:50683800-50685200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:50684200-50684600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:50684200-50684600	Enhancers	Fetal Lung	lung

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