Variant report

Variant	rs73676017
Chromosome Location	chr8:50706453-50706454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10086004	0.94[ASN][1000 genomes]
rs10089399	0.94[ASN][1000 genomes]
rs10090657	0.94[ASN][1000 genomes]
rs10092384	0.94[ASN][1000 genomes]
rs10107423	0.94[ASN][1000 genomes]
rs10111730	0.94[ASN][1000 genomes]
rs1038534	0.94[ASN][1000 genomes]
rs1074385	0.94[ASN][1000 genomes]
rs10957620	0.94[ASN][1000 genomes]
rs10957679	0.82[ASN][1000 genomes]
rs10957682	0.82[ASN][1000 genomes]
rs11785147	0.94[ASN][1000 genomes]
rs11786939	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11787050	0.82[ASN][1000 genomes]
rs12542041	0.91[ASN][1000 genomes]
rs12542687	0.88[ASN][1000 genomes]
rs12547245	0.91[ASN][1000 genomes]
rs12550124	0.83[ASN][1000 genomes]
rs12677051	0.94[ASN][1000 genomes]
rs13251355	0.94[ASN][1000 genomes]
rs13255117	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13261298	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13267366	0.94[ASN][1000 genomes]
rs1352112	0.94[ASN][1000 genomes]
rs1352113	0.81[ASN][1000 genomes]
rs1385974	0.94[ASN][1000 genomes]
rs1385975	0.94[ASN][1000 genomes]
rs1385976	0.82[ASN][1000 genomes]
rs1385982	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486241	0.94[ASN][1000 genomes]
rs1486242	0.94[ASN][1000 genomes]
rs1486243	0.94[ASN][1000 genomes]
rs1486251	0.94[ASN][1000 genomes]
rs1486252	0.94[ASN][1000 genomes]
rs1486253	0.94[ASN][1000 genomes]
rs1486254	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1552371	0.81[ASN][1000 genomes]
rs1552372	0.94[ASN][1000 genomes]
rs1552373	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1552375	0.92[ASN][1000 genomes]
rs1552377	0.91[ASN][1000 genomes]
rs1580468	0.94[ASN][1000 genomes]
rs1586364	0.82[ASN][1000 genomes]
rs1601569	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16912794	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913087	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913172	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16913461	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913472	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913475	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913687	0.82[ASN][1000 genomes]
rs1906015	0.88[ASN][1000 genomes]
rs1979535	0.94[ASN][1000 genomes]
rs1994344	0.94[ASN][1000 genomes]
rs2129162	0.94[ASN][1000 genomes]
rs2129164	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2129165	0.90[ASN][1000 genomes]
rs2385545	0.94[ASN][1000 genomes]
rs2385546	0.94[ASN][1000 genomes]
rs2385547	0.94[ASN][1000 genomes]
rs2385548	0.82[ASN][1000 genomes]
rs4242455	0.83[ASN][1000 genomes]
rs4339657	0.92[ASN][1000 genomes]
rs4383988	0.94[ASN][1000 genomes]
rs4389954	0.83[ASN][1000 genomes]
rs4457345	0.83[ASN][1000 genomes]
rs4507777	0.80[ASN][1000 genomes]
rs4584153	0.94[ASN][1000 genomes]
rs4873113	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873114	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873116	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873118	0.82[ASN][1000 genomes]
rs4873119	0.82[ASN][1000 genomes]
rs4873376	0.83[ASN][1000 genomes]
rs4873379	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4873382	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873383	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873388	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873391	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873392	0.82[ASN][1000 genomes]
rs55636909	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55879210	0.82[ASN][1000 genomes]
rs56659775	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57462717	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58764084	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59379959	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59848488	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60213702	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60631955	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61662535	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6472721	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6994224	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7008924	0.92[ASN][1000 genomes]
rs7013903	0.94[ASN][1000 genomes]
rs73582706	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73582713	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73582718	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73582724	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73582755	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73582756	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7388392	0.91[ASN][1000 genomes]
rs7463456	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7825552	0.94[ASN][1000 genomes]
rs7826013	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7828311	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7831807	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7834858	0.80[AMR][1000 genomes]
rs9298228	0.94[ASN][1000 genomes]
rs9298229	0.94[ASN][1000 genomes]
rs964011	0.94[ASN][1000 genomes]
rs974740	0.82[ASN][1000 genomes]
rs974742	0.82[ASN][1000 genomes]
rs9886451	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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