Variant report

Variant	rs7834858
Chromosome Location	chr8:50724159-50724160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10504093	0.89[MEX][hapmap]
rs11783503	1.00[MEX][hapmap]
rs11783631	1.00[MEX][hapmap]
rs1385982	0.84[AMR][1000 genomes]
rs1486254	0.94[AMR][1000 genomes]
rs1486263	0.89[MEX][hapmap]
rs16912794	0.97[AMR][1000 genomes]
rs16913087	0.90[AMR][1000 genomes]
rs16913172	0.90[AMR][1000 genomes]
rs16913838	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16913881	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16913981	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2129167	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2306742	1.00[EUR][1000 genomes]
rs2450290	0.89[MEX][hapmap]
rs318851	0.89[MEX][hapmap]
rs318853	0.89[MEX][hapmap]
rs318861	0.89[MEX][hapmap]
rs318919	0.89[JPT][hapmap]
rs318922	0.89[JPT][hapmap]
rs4392911	0.82[ASN][1000 genomes]
rs4873113	0.97[AMR][1000 genomes]
rs4873114	0.97[AMR][1000 genomes]
rs4873382	0.97[AMR][1000 genomes]
rs4873383	0.97[AMR][1000 genomes]
rs4873400	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs55636909	0.90[AMR][1000 genomes]
rs56659775	0.94[AMR][1000 genomes]
rs58254228	1.00[EUR][1000 genomes]
rs58740018	1.00[EUR][1000 genomes]
rs58764084	0.90[AMR][1000 genomes]
rs59272691	1.00[EUR][1000 genomes]
rs59379959	0.82[AMR][1000 genomes]
rs59841322	1.00[EUR][1000 genomes]
rs59848488	0.93[AMR][1000 genomes]
rs60153766	1.00[EUR][1000 genomes]
rs60213702	0.91[AMR][1000 genomes]
rs60356093	1.00[EUR][1000 genomes]
rs60631955	0.90[AMR][1000 genomes]
rs61374770	1.00[EUR][1000 genomes]
rs61662535	0.90[AMR][1000 genomes]
rs6472721	0.97[AMR][1000 genomes]
rs6472817	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs66647778	0.82[ASN][1000 genomes]
rs6994224	0.93[AMR][1000 genomes]
rs73569315	1.00[EUR][1000 genomes]
rs73569317	1.00[EUR][1000 genomes]
rs73582706	0.85[AMR][1000 genomes]
rs73582713	0.94[AMR][1000 genomes]
rs73582718	0.97[AMR][1000 genomes]
rs73582755	0.90[AMR][1000 genomes]
rs73582756	0.90[AMR][1000 genomes]
rs73584719	1.00[EUR][1000 genomes]
rs73584722	1.00[EUR][1000 genomes]
rs73584723	1.00[EUR][1000 genomes]
rs73584728	1.00[EUR][1000 genomes]
rs73584754	1.00[EUR][1000 genomes]
rs73584759	1.00[EUR][1000 genomes]
rs73584763	1.00[EUR][1000 genomes]
rs73584765	1.00[EUR][1000 genomes]
rs73584771	1.00[EUR][1000 genomes]
rs73676017	0.80[AMR][1000 genomes]
rs73677815	1.00[EUR][1000 genomes]
rs7826013	0.93[AMR][1000 genomes]
rs7845651	0.89[JPT][hapmap]
rs974741	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50720000-50724400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50720000-50725000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:50720200-50724200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:50723000-50725800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:50723600-50725200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:50723800-50725200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:50723800-50725400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:50723800-50726000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:50724000-50724800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:50724000-50725200	Enhancers	HUES6 Cell Line	embryonic stem cell

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