Variant report

Variant	rs16913881
Chromosome Location	chr8:50831987-50831988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10113044	1.00[AMR][1000 genomes]
rs16913838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913859	1.00[AMR][1000 genomes]
rs16913981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914042	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16914070	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs223081	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2306742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28529396	1.00[AMR][1000 genomes]
rs318872	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs318873	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs318875	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs415276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57307349	1.00[AMR][1000 genomes]
rs57882761	1.00[AMR][1000 genomes]
rs58254228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58520473	1.00[AMR][1000 genomes]
rs58740018	1.00[EUR][1000 genomes]
rs59272691	1.00[EUR][1000 genomes]
rs59841322	1.00[EUR][1000 genomes]
rs60153766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60356093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61374770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472674	1.00[JPT][hapmap]
rs6988557	1.00[JPT][hapmap]
rs73569305	1.00[AMR][1000 genomes]
rs73569306	1.00[AMR][1000 genomes]
rs73569315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569327	1.00[AMR][1000 genomes]
rs73569333	1.00[AMR][1000 genomes]
rs73569338	1.00[AMR][1000 genomes]
rs73569339	1.00[AMR][1000 genomes]
rs73569343	1.00[AMR][1000 genomes]
rs73584719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584723	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73584758	1.00[AMR][1000 genomes]
rs73584759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73584763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73584765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73584768	1.00[AMR][1000 genomes]
rs73584770	1.00[AMR][1000 genomes]
rs73584771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73584773	1.00[AMR][1000 genomes]
rs73676082	1.00[AMR][1000 genomes]
rs73677815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834858	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50828200-50833800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50828600-50836000	Weak transcription	Fetal Brain Female	brain
3	chr8:50828800-50834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:50829800-50832000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:50829800-50833400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:50830000-50833600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:50830200-50834800	Weak transcription	Brain Germinal Matrix	brain
8	chr8:50830600-50833200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:50830600-50833400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:50831000-50832400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:50831200-50833200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:50831600-50832000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:50831800-50832000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:50831800-50834800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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