Variant report
| Variant | rs28529396 |
|---|---|
| Chromosome Location | chr8:50781532-50781533 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:50777318..50779724-chr8:50779730..50781959,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10113044 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16913838 | 1.00[AMR][1000 genomes] |
| rs16913859 | 1.00[AMR][1000 genomes] |
| rs16913881 | 1.00[AMR][1000 genomes] |
| rs16913981 | 1.00[AMR][1000 genomes] |
| rs16914042 | 1.00[AMR][1000 genomes] |
| rs16914070 | 1.00[AMR][1000 genomes] |
| rs2306742 | 1.00[AMR][1000 genomes] |
| rs57307349 | 1.00[AMR][1000 genomes] |
| rs57882761 | 1.00[AMR][1000 genomes] |
| rs58254228 | 1.00[AMR][1000 genomes] |
| rs58520473 | 1.00[AMR][1000 genomes] |
| rs60153766 | 1.00[AMR][1000 genomes] |
| rs60356093 | 1.00[AMR][1000 genomes] |
| rs61374770 | 1.00[AMR][1000 genomes] |
| rs73569305 | 1.00[AMR][1000 genomes] |
| rs73569306 | 1.00[AMR][1000 genomes] |
| rs73569315 | 1.00[AMR][1000 genomes] |
| rs73569317 | 1.00[AMR][1000 genomes] |
| rs73569327 | 1.00[AMR][1000 genomes] |
| rs73569333 | 1.00[AMR][1000 genomes] |
| rs73569338 | 1.00[AMR][1000 genomes] |
| rs73569339 | 1.00[AMR][1000 genomes] |
| rs73569343 | 1.00[AMR][1000 genomes] |
| rs73584719 | 1.00[AMR][1000 genomes] |
| rs73584722 | 1.00[AMR][1000 genomes] |
| rs73584723 | 1.00[AMR][1000 genomes] |
| rs73584728 | 1.00[AMR][1000 genomes] |
| rs73584754 | 1.00[AMR][1000 genomes] |
| rs73584758 | 1.00[AMR][1000 genomes] |
| rs73584759 | 1.00[AMR][1000 genomes] |
| rs73584763 | 1.00[AMR][1000 genomes] |
| rs73584765 | 1.00[AMR][1000 genomes] |
| rs73584768 | 1.00[AMR][1000 genomes] |
| rs73584770 | 1.00[AMR][1000 genomes] |
| rs73584771 | 1.00[AMR][1000 genomes] |
| rs73584773 | 1.00[AMR][1000 genomes] |
| rs73676082 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv3360583 | chr8:50780826-50781654 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50775200-50782200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr8:50781400-50783400 | Enhancers | Dnd41 | blood |
