Variant report

Variant	rs16914042
Chromosome Location	chr8:50848278-50848279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10046680	0.88[YRI][hapmap]
rs10097416	0.88[YRI][hapmap]
rs10113044	1.00[AMR][1000 genomes]
rs16913838	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16913859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16913881	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16913981	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16914070	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16914099	0.80[YRI][hapmap]
rs16914125	0.80[YRI][hapmap]
rs16914130	0.80[YRI][hapmap]
rs2306742	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs28529396	1.00[AMR][1000 genomes]
rs57307349	1.00[AMR][1000 genomes]
rs57882761	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58254228	1.00[AMR][1000 genomes]
rs58520473	1.00[AMR][1000 genomes]
rs60153766	1.00[AMR][1000 genomes]
rs60356093	1.00[AMR][1000 genomes]
rs61374770	1.00[AMR][1000 genomes]
rs73569305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569306	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569315	1.00[AMR][1000 genomes]
rs73569317	1.00[AMR][1000 genomes]
rs73569327	1.00[AMR][1000 genomes]
rs73569333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569338	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569339	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584719	1.00[AMR][1000 genomes]
rs73584722	1.00[AMR][1000 genomes]
rs73584723	1.00[AMR][1000 genomes]
rs73584728	1.00[AMR][1000 genomes]
rs73584754	1.00[AMR][1000 genomes]
rs73584758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584759	1.00[AMR][1000 genomes]
rs73584763	1.00[AMR][1000 genomes]
rs73584765	1.00[AMR][1000 genomes]
rs73584768	1.00[AMR][1000 genomes]
rs73584770	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584771	1.00[AMR][1000 genomes]
rs73584773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676082	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv971234	chr8:50842641-50848642	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50838600-50854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50838800-50853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:50842200-50850400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:50847600-50848800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:50848000-50848400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:50848200-50848600	Enhancers	HUES64 Cell Line	embryonic stem cell

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