Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr8:50655948-50656145	GM12878	blood:	n/a	n/a
2	POLR2A	chr8:50655769-50655969	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50655915..50658373-chr8:50666894..50669710,2	MCF-7	breast:

Variant related genes	Relation type
PSAT1P1	TF binding region

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10091226	1.00[EUR][1000 genomes]
rs10102589	1.00[AMR][1000 genomes]
rs10957592	0.83[AMR][1000 genomes]
rs12386943	0.83[AMR][1000 genomes]
rs12386985	0.83[AMR][1000 genomes]
rs12545873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913838	1.00[JPT][hapmap]
rs16913881	1.00[JPT][hapmap]
rs16913981	1.00[JPT][hapmap]
rs223081	1.00[JPT][hapmap]
rs2306742	1.00[JPT][hapmap]
rs2449957	1.00[JPT][hapmap]
rs28433725	1.00[EUR][1000 genomes]
rs318872	1.00[JPT][hapmap]
rs318873	1.00[JPT][hapmap]
rs318875	1.00[JPT][hapmap]
rs415276	1.00[JPT][hapmap]
rs4567054	0.83[AMR][1000 genomes]
rs6415620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415621	0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472664	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472666	1.00[AMR][1000 genomes]
rs6472673	1.00[AMR][1000 genomes]
rs6983019	1.00[EUR][1000 genomes]
rs6983303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004408	1.00[EUR][1000 genomes]
rs7386545	0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs9298227	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50654800-50656600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:50655200-50656600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:50655200-50656600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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