Variant report

Variant	rs6983303
Chromosome Location	chr8:50649694-50649695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10091226	1.00[EUR][1000 genomes]
rs12545873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913838	1.00[JPT][hapmap]
rs16913881	1.00[JPT][hapmap]
rs16913981	1.00[JPT][hapmap]
rs223081	1.00[JPT][hapmap]
rs2306742	1.00[JPT][hapmap]
rs2449957	1.00[JPT][hapmap]
rs28433725	1.00[EUR][1000 genomes]
rs318872	1.00[JPT][hapmap]
rs318873	1.00[JPT][hapmap]
rs318875	1.00[JPT][hapmap]
rs415276	1.00[JPT][hapmap]
rs6415620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472674	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983019	1.00[EUR][1000 genomes]
rs7004408	1.00[EUR][1000 genomes]
rs9298227	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50646200-50651600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:50649000-50649800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:50649200-50649800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:50649200-50649800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:50649400-50649800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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