Variant report

Variant	rs28433725
Chromosome Location	chr8:50769932-50769933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10091226	1.00[EUR][1000 genomes]
rs12545873	1.00[EUR][1000 genomes]
rs1486245	0.89[ASN][1000 genomes]
rs60153766	0.90[ASN][1000 genomes]
rs6415620	1.00[EUR][1000 genomes]
rs6472674	1.00[EUR][1000 genomes]
rs6983019	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983303	1.00[EUR][1000 genomes]
rs73584719	0.90[ASN][1000 genomes]
rs73584722	0.90[ASN][1000 genomes]
rs73584723	0.90[ASN][1000 genomes]
rs73584728	0.90[ASN][1000 genomes]
rs9298227	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50767000-50772800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50768400-50770000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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