Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10091226	1.00[EUR][1000 genomes]
rs12545873	1.00[EUR][1000 genomes]
rs1486245	0.89[ASN][1000 genomes]
rs16913838	1.00[JPT][hapmap]
rs16913881	1.00[JPT][hapmap]
rs16913981	1.00[JPT][hapmap]
rs223081	1.00[JPT][hapmap]
rs2306742	1.00[JPT][hapmap]
rs2449957	1.00[JPT][hapmap]
rs28433725	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318872	1.00[JPT][hapmap]
rs318873	1.00[JPT][hapmap]
rs318875	1.00[JPT][hapmap]
rs415276	1.00[JPT][hapmap]
rs60153766	0.90[ASN][1000 genomes]
rs6415620	1.00[EUR][1000 genomes]
rs6472674	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6983019	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983303	1.00[EUR][1000 genomes]
rs6988557	1.00[JPT][hapmap]
rs73584719	0.90[ASN][1000 genomes]
rs73584722	0.90[ASN][1000 genomes]
rs73584723	0.90[ASN][1000 genomes]
rs73584728	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50772800-50775600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50773000-50774600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:50773400-50775400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:50774000-50775400	Enhancers	Fetal Intestine Small	intestine
5	chr8:50774200-50775600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:50774400-50774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:50774400-50774800	Weak transcription	Brain Germinal Matrix	brain

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