Variant report

Variant	rs12386985
Chromosome Location	chr8:50667715-50667716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50655915..50658373-chr8:50666894..50669710,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10092529	0.85[AMR][1000 genomes]
rs10102589	0.83[AMR][1000 genomes]
rs10957592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12386943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12545873	0.83[AMR][1000 genomes]
rs12679231	0.85[AMR][1000 genomes]
rs13252151	0.83[AMR][1000 genomes]
rs13254104	0.85[AMR][1000 genomes]
rs13278375	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13281608	0.83[AMR][1000 genomes]
rs1385973	0.85[AMR][1000 genomes]
rs1385978	0.85[AMR][1000 genomes]
rs1486246	0.85[AMR][1000 genomes]
rs1486248	0.85[AMR][1000 genomes]
rs1486249	0.85[AMR][1000 genomes]
rs1552374	0.85[AMR][1000 genomes]
rs1906016	0.85[AMR][1000 genomes]
rs2129163	0.85[AMR][1000 genomes]
rs2171191	0.83[AMR][1000 genomes]
rs2385551	0.85[AMR][1000 genomes]
rs2385606	0.85[AMR][1000 genomes]
rs4276702	0.85[AMR][1000 genomes]
rs4437664	0.85[AMR][1000 genomes]
rs4548196	0.83[AMR][1000 genomes]
rs4567054	1.00[AMR][1000 genomes]
rs4644276	0.86[AFR][1000 genomes]
rs4873380	0.83[AMR][1000 genomes]
rs4873384	0.83[AMR][1000 genomes]
rs4873385	0.83[AMR][1000 genomes]
rs4873389	0.85[AMR][1000 genomes]
rs6415620	0.83[AMR][1000 genomes]
rs6415621	0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6472664	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6472666	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6472673	0.83[AMR][1000 genomes]
rs6472674	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs6996687	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7386545	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7461601	0.85[AMR][1000 genomes]
rs7812500	0.85[AMR][1000 genomes]
rs7812505	0.85[AMR][1000 genomes]
rs7816366	0.85[AMR][1000 genomes]
rs7819106	0.85[AMR][1000 genomes]
rs7824738	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs973721	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50667400-50668000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr8:50667600-50668200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:50667600-50668200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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