Variant report

Variant	rs1906016
Chromosome Location	chr8:50774139-50774140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10092529	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10957592	0.85[AMR][1000 genomes]
rs12386943	0.85[AMR][1000 genomes]
rs12386985	0.85[AMR][1000 genomes]
rs12679231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12681875	0.87[AMR][1000 genomes]
rs13254104	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385973	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385977	0.83[AFR][1000 genomes]
rs1385978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486244	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1486246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552374	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552376	0.87[AMR][1000 genomes]
rs1586365	0.87[AMR][1000 genomes]
rs2129163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220264	0.87[AMR][1000 genomes]
rs2385549	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385550	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385551	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385606	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2450289	0.87[AMR][1000 genomes]
rs318852	0.87[AMR][1000 genomes]
rs318855	0.87[AMR][1000 genomes]
rs318856	0.87[AMR][1000 genomes]
rs318857	0.87[AMR][1000 genomes]
rs318878	0.87[AMR][1000 genomes]
rs318879	0.87[AMR][1000 genomes]
rs412095	0.87[AMR][1000 genomes]
rs413492	0.87[AMR][1000 genomes]
rs4276702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4424267	0.87[AMR][1000 genomes]
rs4437664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4567054	0.85[AMR][1000 genomes]
rs4873389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472793	0.87[AMR][1000 genomes]
rs7461601	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812505	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819106	1.00[AMR][1000 genomes]
rs7824922	0.87[AMR][1000 genomes]
rs7841672	0.95[AFR][1000 genomes]
rs973721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50772800-50775600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50773000-50774600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:50773200-50774400	Enhancers	Brain Germinal Matrix	brain
4	chr8:50773400-50775400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:50773600-50774200	Enhancers	Fetal Intestine Large	intestine
6	chr8:50774000-50775400	Enhancers	Fetal Intestine Small	intestine

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