Variant report

Variant	rs12679231
Chromosome Location	chr8:50744555-50744556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10092529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10957592	0.85[AMR][1000 genomes]
rs12386943	0.85[AMR][1000 genomes]
rs12386985	0.85[AMR][1000 genomes]
rs12681875	0.87[AMR][1000 genomes]
rs13252151	0.83[AFR][1000 genomes]
rs13254104	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486244	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1486246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552374	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552376	0.87[AMR][1000 genomes]
rs1586365	0.87[AMR][1000 genomes]
rs1906016	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2129163	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2171191	0.81[AFR][1000 genomes]
rs2220264	0.87[AMR][1000 genomes]
rs2385549	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385550	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385551	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2450289	0.87[AMR][1000 genomes]
rs318852	0.87[AMR][1000 genomes]
rs318855	0.87[AMR][1000 genomes]
rs318856	0.87[AMR][1000 genomes]
rs318857	0.87[AMR][1000 genomes]
rs318878	0.87[AMR][1000 genomes]
rs318879	0.87[AMR][1000 genomes]
rs412095	0.87[AMR][1000 genomes]
rs413492	0.87[AMR][1000 genomes]
rs4276702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4424267	0.87[AMR][1000 genomes]
rs4437664	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4567054	0.85[AMR][1000 genomes]
rs4873384	0.83[AFR][1000 genomes]
rs4873385	0.83[AFR][1000 genomes]
rs4873389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472793	0.87[AMR][1000 genomes]
rs7461601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812500	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816366	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819106	1.00[AMR][1000 genomes]
rs7824922	0.87[AMR][1000 genomes]
rs7841672	0.84[AFR][1000 genomes]
rs973721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50735200-50747600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50744000-50746200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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