Variant report

Variant	rs412095
Chromosome Location	chr8:50839807-50839808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50832548..50835126-chr8:50839783..50841421,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10092529	0.87[AMR][1000 genomes]
rs12679231	0.87[AMR][1000 genomes]
rs12681875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13254104	0.87[AMR][1000 genomes]
rs1385973	0.87[AMR][1000 genomes]
rs1385978	0.87[AMR][1000 genomes]
rs1486246	0.87[AMR][1000 genomes]
rs1486248	0.87[AMR][1000 genomes]
rs1486249	0.87[AMR][1000 genomes]
rs1552374	0.87[AMR][1000 genomes]
rs1552376	1.00[AMR][1000 genomes]
rs1586365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1906016	0.87[AMR][1000 genomes]
rs2129163	0.87[AMR][1000 genomes]
rs2220264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385551	0.87[AMR][1000 genomes]
rs2385606	0.87[AMR][1000 genomes]
rs2450289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318863	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318876	0.80[AFR][1000 genomes]
rs318878	1.00[AMR][1000 genomes]
rs318879	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318880	0.80[AFR][1000 genomes]
rs318882	0.82[AFR][1000 genomes]
rs318883	0.82[AFR][1000 genomes]
rs318887	0.81[AFR][1000 genomes]
rs318889	0.80[AFR][1000 genomes]
rs413492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4276702	0.87[AMR][1000 genomes]
rs4424267	1.00[AMR][1000 genomes]
rs4437664	0.87[AMR][1000 genomes]
rs4873389	0.87[AMR][1000 genomes]
rs6472793	1.00[AMR][1000 genomes]
rs7461601	0.87[AMR][1000 genomes]
rs7812500	0.87[AMR][1000 genomes]
rs7812505	0.87[AMR][1000 genomes]
rs7816366	0.87[AMR][1000 genomes]
rs7819106	0.87[AMR][1000 genomes]
rs7824922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs973721	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50832000-50841800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:50836600-50841600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:50838600-50854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:50838800-50853200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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