Variant report

Variant	rs318880
Chromosome Location	chr8:50855838-50855839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2220264	0.81[YRI][hapmap];0.91[AFR][1000 genomes]
rs2449965	0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2450289	0.80[AFR][1000 genomes]
rs318863	0.80[AFR][1000 genomes]
rs318876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318878	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs318879	0.81[YRI][hapmap];0.93[AFR][1000 genomes]
rs318882	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318883	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318887	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs412095	0.80[AFR][1000 genomes]
rs442875	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50848800-50857800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:50854800-50857800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links