Variant report

Variant	rs318863
Chromosome Location	chr8:50834643-50834644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12681875	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1552376	0.89[AMR][1000 genomes]
rs1586365	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2220264	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2450289	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318852	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318855	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318856	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318857	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318876	0.80[AFR][1000 genomes]
rs318878	0.89[AMR][1000 genomes]
rs318879	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318880	0.80[AFR][1000 genomes]
rs318882	0.82[AFR][1000 genomes]
rs318883	0.82[AFR][1000 genomes]
rs318887	0.81[AFR][1000 genomes]
rs318889	0.80[AFR][1000 genomes]
rs412095	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs413492	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4424267	0.89[AMR][1000 genomes]
rs6472793	0.89[AMR][1000 genomes]
rs7824922	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50828600-50836000	Weak transcription	Fetal Brain Female	brain
2	chr8:50830200-50834800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:50831800-50834800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:50832000-50841800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:50833000-50838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:50833200-50836000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:50833400-50834800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:50833600-50836000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:50833800-50838800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:50834200-50834800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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