Variant report

Variant	rs318852
Chromosome Location	chr8:50818617-50818618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:50818614-50818917	HepG2	liver:	n/a	chr8:50818770-50818781

Variant related genes	Relation type
SNTG1	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10092529	0.87[AMR][1000 genomes]
rs12679231	0.87[AMR][1000 genomes]
rs12681875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13254104	0.87[AMR][1000 genomes]
rs1385973	0.87[AMR][1000 genomes]
rs1385978	0.87[AMR][1000 genomes]
rs1486246	0.87[AMR][1000 genomes]
rs1486248	0.87[AMR][1000 genomes]
rs1486249	0.87[AMR][1000 genomes]
rs1552374	0.87[AMR][1000 genomes]
rs1552376	1.00[AMR][1000 genomes]
rs1586365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1906016	0.87[AMR][1000 genomes]
rs2129163	0.87[AMR][1000 genomes]
rs2220264	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385551	0.87[AMR][1000 genomes]
rs2385606	0.87[AMR][1000 genomes]
rs2450289	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318855	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318857	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318863	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs318878	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs318879	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318881	0.85[YRI][hapmap]
rs318882	0.80[AFR][1000 genomes]
rs318883	0.93[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.80[AFR][1000 genomes]
rs412095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs413492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4276702	0.87[AMR][1000 genomes]
rs4424267	1.00[AMR][1000 genomes]
rs442875	0.82[LWK][hapmap]
rs4437664	0.87[AMR][1000 genomes]
rs4873389	0.87[AMR][1000 genomes]
rs6472793	1.00[AMR][1000 genomes]
rs7461601	0.87[AMR][1000 genomes]
rs7812500	0.87[AMR][1000 genomes]
rs7812505	0.87[AMR][1000 genomes]
rs7816366	0.87[AMR][1000 genomes]
rs7819106	0.87[AMR][1000 genomes]
rs7824922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs973721	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50814000-50819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50814000-50819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50816000-50821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:50818400-50821400	Enhancers	Pancreatic Islets	Pancreatic Islet

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