Variant report

Variant	rs442875
Chromosome Location	chr8:50862021-50862022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs170331	0.81[YRI][hapmap]
rs2220264	0.88[AFR][1000 genomes]
rs2247368	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs2449965	1.00[AMR][1000 genomes]
rs2450287	0.81[YRI][hapmap]
rs318852	0.82[LWK][hapmap]
rs318858	0.81[YRI][hapmap]
rs318874	0.81[YRI][hapmap]
rs318876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318878	0.81[AFR][1000 genomes]
rs318879	0.90[AFR][1000 genomes]
rs318880	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318882	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318883	0.86[LWK][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318889	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967107	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50858400-50865000	Weak transcription	Spleen	Spleen
3	chr8:50858400-50865800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:50858400-50870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:50858400-50871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:50860400-50875400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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