Variant report

Variant	rs4873385
Chromosome Location	chr8:50737221-50737222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10957592	0.83[AMR][1000 genomes]
rs12386943	0.83[AMR][1000 genomes]
rs12386985	0.83[AMR][1000 genomes]
rs12679231	0.83[AFR][1000 genomes]
rs13252151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13278375	1.00[AMR][1000 genomes]
rs13281608	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385973	0.82[AFR][1000 genomes]
rs1385978	0.81[AFR][1000 genomes]
rs2171191	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2385606	0.82[AFR][1000 genomes]
rs4548196	1.00[AMR][1000 genomes]
rs4567054	0.83[AMR][1000 genomes]
rs4644276	0.83[AMR][1000 genomes]
rs4873380	1.00[AMR][1000 genomes]
rs4873384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996687	1.00[AMR][1000 genomes]
rs7461601	0.84[AFR][1000 genomes]
rs7824738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50735200-50747600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:50736000-50738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:50736000-50739600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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