Variant report

Variant	rs4873380
Chromosome Location	chr8:50709932-50709933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10957592	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12386943	0.83[AMR][1000 genomes]
rs12386985	0.83[AMR][1000 genomes]
rs13252151	1.00[AMR][1000 genomes]
rs13278375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13281608	1.00[AMR][1000 genomes]
rs2171191	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs4548196	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4567054	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4644276	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4873384	1.00[AMR][1000 genomes]
rs4873385	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs6415621	0.84[YRI][hapmap]
rs6472674	0.84[YRI][hapmap]
rs6996687	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7386545	0.83[ASW][hapmap]
rs7824738	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50707400-50711000	Enhancers	HMEC	breast
4	chr8:50707800-50712800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:50708000-50711000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:50708200-50710400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:50708200-50710800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:50708600-50717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:50708800-50710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:50708800-50710800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:50709000-50710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:50709000-50712800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:50709200-50710200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:50709600-50711400	Enhancers	Brain Germinal Matrix	brain
15	chr8:50709600-50712400	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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