Variant report

Variant	rs13281608
Chromosome Location	chr8:50718685-50718686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10957592	0.83[AMR][1000 genomes]
rs12386943	0.83[AMR][1000 genomes]
rs12386985	0.83[AMR][1000 genomes]
rs13252151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13278375	1.00[AMR][1000 genomes]
rs1486255	0.83[AFR][1000 genomes]
rs2171191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4548196	1.00[AMR][1000 genomes]
rs4567054	0.83[AMR][1000 genomes]
rs4644276	0.83[AMR][1000 genomes]
rs4873115	0.83[AFR][1000 genomes]
rs4873380	1.00[AMR][1000 genomes]
rs4873381	0.82[AFR][1000 genomes]
rs4873384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4873385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996687	1.00[AMR][1000 genomes]
rs7824738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50710400-50719600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:50712600-50719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:50712800-50719600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:50716800-50719800	Weak transcription	HMEC	breast
7	chr8:50717000-50719600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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